2. Academic Validation
  3. TRAIP serves as a potential prognostic biomarker and correlates with immune infiltrates in lung adenocarcinoma

TRAIP serves as a potential prognostic biomarker and correlates with immune infiltrates in lung adenocarcinoma

  • Int Immunopharmacol. 2023 Jul 12;122:110605. doi: 10.1016/j.intimp.2023.110605.
Yu Jing 1,  Ziming Mao 1,  Jing Zhu 1,  Xirui Ma 1,  Huifang Liu 1,  Fengling Chen 2
Affiliations

Affiliations

  • 1 Department of Endocrinology and Metabolism, Shanghai Ninth People's Hospital, Shanghai JiaoTong University School of Medicine, Shanghai, China.
  • 2 Department of Endocrinology and Metabolism, Shanghai Ninth People's Hospital, Shanghai JiaoTong University School of Medicine, Shanghai, China. Electronic address: [email protected].
PMID: 37451021 DOI: 10.1016/j.intimp.2023.110605
Abstract

Background: Lung adenocarcinoma (LUAD) is one of the major types of lung Cancer with high morbidity and mortality. The TRAF-interacting protein (TRAIP) is a ring-type E3 ubiquitin ligase which has been recently identified to play pivotal roles in various cancers. However, the expression and function of TRAIP in LUAD remain elusive.

Methods: In this study, we used bioinformatic tools as well as molecular experiments to explore the exact role of TRAIP and the underlying mechanism.

Results: Data mining across the UALCAN, GEPIA and GTEx, GEO and HPA databases revealed that TRAIP was significantly overexpressed in LUAD tissues than that in adjacent normal tissues. Kaplan-Meier curve showed that high TRAIP expression was associated with poor overall survival (OS) and relapse-free survival (RFS). Univariate and multivariate COX regression analysis revealed that TRAIP was an independent risk factor in LUAD. And the TRAIP-based nomogram further supported the prognostic role of TRAIP in LUAD. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis demonstrated that TRAIP-associated genes were mainly involved in DNA replication, cell cycle and other processes. The immune infiltration analysis indicated that TRAIP expression was tightly correlated with the infiltration of diverse immune cell types, including B cell, CD8 + T cell, neutrophil and dendritic cell. Moreover, TRAIP expression was observed to be significantly associated with tumor infiltrating lymphocytes (TILs) and immune checkpoint molecules. In vitro experiments further confirmed knockdown of TRAIP inhibited cell migration and invasion, as well as decreasing chemokine production and inhibiting M2-like macrophage recruitment. Lastly, CMap analysis identified 10 small molecule compounds that may target TRAIP, providing potential therapies for LUAD.

Conclusions: Collectively, our study found that TRAIP is an oncogenic gene in LUAD, which may be a potential prognostic biomarker and promising therapeutic target for LUAD.

Keywords

Immune cell infiltration; Lung adenocarcinoma; Prognostic biomarker; TRAIP.

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