HEM1 deficiency disrupts mTORC2 and F-actin control in inherited immunodysregulatory disease

  • Science. 2020 Jul 10;369(6500):202-207. doi: 10.1126/science.aay5663.
Sarah A Cook  #  1 William A Comrie  #  1  2 M Cecilia Poli  3  4  5 Morgan Similuk  6 Andrew J Oler  7 Aiman J Faruqi  1 Douglas B Kuhns  8 Sheng Yang  9 Alexander Vargas-Hernández  3  4 Alexandre F Carisey  3  4 Benjamin Fournier  10  11 D Eric Anderson  12 Susan Price  13 Margery Smelkinson  14 Wadih Abou Chahla  15 Lisa R Forbes  3  4 Emily M Mace  16 Tram N Cao  3  4 Zeynep H Coban-Akdemir  17  18 Shalini N Jhangiani  18  19 Donna M Muzny  18  19 Richard A Gibbs  17  18  19 James R Lupski  17  18  19 Jordan S Orange  16 Geoffrey D E Cuvelier  20 Moza Al Hassani  21 Nawal Al Kaabi  21 Zain Al Yafei  21 Soma Jyonouchi  22  23 Nikita Raje  24  25 Jason W Caldwell  26 Yanping Huang  27  28 Janis K Burkhardt  27 Sylvain Latour  10  11 Baoyu Chen  9 Gehad ElGhazali  21 V Koneti Rao  13 Ivan K Chinn  3  4 Michael J Lenardo  29
Affiliations
  • 1. Molecular Development of the Immune System Section, Laboratory of Immune System Biology, and Clinical Genomics Program, National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), Bethesda, MD, USA.
  • 2. Neomics Pharmaceuticals, LLC, Gaithersburg, MD, USA.
  • 3. Department of Pediatrics, Baylor College of Medicine, Houston, TX, USA.
  • 4. Section of Pediatric Immunology, Allergy, and Retrovirology, Texas Children's Hospital, Houston, TX, USA.
  • 5. Program of Immunogenetics and Translational Immunology, Instituto de Ciencias e Innovación en Medicina, Facultad de Medicina, Clínica Alemana-Universidad del Desarrollo, Santiago, Chile.
  • 6. Division of Intramural Research, NIAID, NIH, Bethesda, MD, USA.
  • 7. Bioinformatics and Computational Biosciences Branch, Office of Cyber Infrastructure and Computational Biology, NIAID, NIH, Bethesda, MD, USA.
  • 8. Neutrophil Monitoring Laboratory, Leidos Biomedical Research, Inc., Frederick National Laboratory for Cancer Research, Frederick, MD, USA.
  • 9. Roy J. Carver Department of Biochemistry, Biophysics and Molecular Biology, Iowa State University, Ames, IA, USA.
  • 10. Laboratory of Lymphocyte Activation and Susceptibility to EBV, INSERM UMR 1163, Paris, France.
  • 11. University Paris Descartes Sorbonne Paris Cité, Institut des Maladies Génétiques-IMAGINE, Paris, France.
  • 12. Advanced Mass Spectrometry Facility, National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK), NIH, Bethesda, MD, USA.
  • 13. Laboratory of Clinical Immunology and Microbiology, NIAID, NIH, Bethesda, MD, USA.
  • 14. Biological Imaging Section, Research Technologies Branch, NIAID, NIH, Bethesda, MD, USA.
  • 15. Department of Pediatric Hematology, Jeanne de Flandre Hospital, Centre Hospitalier Universitaire (CHU), Lille, France.
  • 16. Department of Pediatrics, Columbia University Irving Medical Center, New York, NY, USA.
  • 17. Baylor-Hopkins Center for Mendelian Genomics, Houston, TX, USA.
  • 18. Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
  • 19. Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA.
  • 20. Section of Pediatric Hematology/Oncology/BMT, CancerCare Manitoba, University of Manitoba, Winnipeg, MB, Canada.
  • 21. Sheikh Khalifa Medical City, Abu Dhabi Healthcare Company (SEHA), Abu Dhabi, United Arab Emirates.
  • 22. Division of Allergy and Immunology, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
  • 23. Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
  • 24. Division of Allergy, Immunology, Pulmonary, and Sleep Medicine, Children's Mercy Hospital, Kansas City, MO, USA.
  • 25. Department of Internal Medicine and Pediatrics, University of Missouri Kansas City, Kansas City, MO, USA.
  • 26. Section of Pulmonary, Critical Care, Allergy and Immunological Diseases, Wake Forest University School of Medicine, Winston-Salem, NC, USA.
  • 27. Department of Pathology and Laboratory Medicine, Children's Hospital of Philadelphia Research Institute and Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
  • 28. Department of Pathology, Anatomy, and Cell Biology, Thomas Jefferson University, Philadelphia, PA, USA.
  • 29. Molecular Development of the Immune System Section, Laboratory of Immune System Biology, and Clinical Genomics Program, National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), Bethesda, MD, USA. [email protected].
  • # Contributed equally.
Abstract

Immunodeficiency often coincides with hyperactive immune disorders such as autoimmunity, lymphoproliferation, or atopy, but this coincidence is rarely understood on a molecular level. We describe five patients from four families with immunodeficiency coupled with atopy, lymphoproliferation, and cytokine overproduction harboring mutations in NCKAP1L, which encodes the hematopoietic-specific HEM1 protein. These mutations cause the loss of the HEM1 protein and the WAVE regulatory complex (WRC) or disrupt binding to the WRC regulator, Arf1, thereby impairing actin polymerization, synapse formation, and immune cell migration. Diminished cortical actin networks caused by WRC loss led to uncontrolled cytokine release and immune hyperresponsiveness. HEM1 loss also blocked mechanistic target of rapamycin complex 2 (mTORC2)-dependent Akt phosphorylation, T cell proliferation, and selected effector functions, leading to immunodeficiency. Thus, the evolutionarily conserved HEM1 protein simultaneously regulates filamentous actin (F-actin) and mTORC2 signaling to achieve equipoise in immune responses.