A prenylated dsRNA sensor protects against severe COVID-19

  • Science. 2021 Oct 29;374(6567):eabj3624. doi: 10.1126/science.abj3624.
Arthur Wickenhagen  1 Elena Sugrue  #  1 Spyros Lytras  #  1 Srikeerthana Kuchi  #  1 Marko Noerenberg  #  1 Matthew L Turnbull  #  1 Colin Loney  1 Vanessa Herder  1 Jay Allan  1 Innes Jarmson  1 Natalia Cameron-Ruiz  1 Margus Varjak  1 Rute M Pinto  1 Jeffrey Y Lee  2 Louisa Iselin  1  2  3 Natasha Palmalux  1 Douglas G Stewart  1 Simon Swingler  1 Edward J D Greenwood  4 Thomas W M Crozier  4 Quan Gu  1 Emma L Davies  1 Sara Clohisey  5 Bo Wang  5 Fabio Trindade Maranhão Costa  6 Monique Freire Santana  7 Luiz Carlos de Lima Ferreira  8 Lee Murphy  9 Angie Fawkes  9 Alison Meynert  10 Graeme Grimes  10 ISARIC4C Investigators Joao Luiz Da Silva Filho  11 Matthias Marti  11 Joseph Hughes  1 Richard J Stanton  12 Eddie C Y Wang  12 Antonia Ho  1 Ilan Davis  2 Ruth F Jarrett  1 Alfredo Castello  1 David L Robertson  1 Malcolm G Semple  13  14 Peter J M Openshaw  15  16 Massimo Palmarini  1 Paul J Lehner  4 J Kenneth Baillie  5  10  17 Suzannah J Rihn  1 Sam J Wilson  1
Affiliations
  • 1. Medical Research Council-University of Glasgow Centre for Virus Research (CVR), Institute of Infection, Inflammation and Immunity, University of Glasgow, Glasgow, UK.
  • 2. Department of Biochemistry, University of Oxford, Oxford, UK.
  • 3. Nuffield Department of Medicine, University of Oxford, Oxford, UK.
  • 4. Cambridge Institute of Therapeutic Immunology and Infectious Disease, University of Cambridge, Cambridge, UK.
  • 5. Roslin Institute, University of Edinburgh, Edinburgh, UK.
  • 6. Laboratory of Tropical Diseases, Department of Genetics, Evolution, Microbiology and Immunology, Institute of Biology, University of Campinas, Campinas, Sao Paolo, Brazil.
  • 7. Department of Education and Research, Oncology Control Centre of Amazonas State (FCECON), Manaus, Amazonas, Brazil.
  • 8. Postgraduate Program in Tropical Medicine, Tropical Medicine Foundation Dr. Heitor Vieira Dourado, Manaus, Amazonas, Brazil.
  • 9. Edinburgh Clinical Research Facility, University of Edinburgh, Western General Hospital, Edinburgh, UK.
  • 10. Medical Research Council Human Genetics Unit, Institute of Genetics and Molecular Medicine, University of Edinburgh, Western General Hospital, Edinburgh, UK.
  • 11. Wellcome Centre for Molecular Parasitology, Institute of Infection, Immunity and Inflammation, University of Glasgow, Glasgow, UK.
  • 12. Division of Infection & Immunity, Cardiff University, Cardiff, UK.
  • 13. NIHR Health Protection Research Unit for Emerging and Zoonotic Infections, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool, UK.
  • 14. Respiratory Medicine, Alder Hey Children's Hospital, Liverpool, UK.
  • 15. National Heart and Lung Institute, Imperial College London, London, UK.
  • 16. Imperial College Healthcare, National Health Service Trust London, London, UK.
  • 17. Intensive Care Unit, Royal Infirmary of Edinburgh, Edinburgh, UK.
  • # Contributed equally.
Abstract

Inherited genetic factors can influence the severity of COVID-19, but the molecular explanation underpinning a genetic association is often unclear. Intracellular Antiviral defenses can inhibit the replication of viruses and reduce disease severity. To better understand the Antiviral defenses relevant to COVID-19, we used interferon-stimulated gene (ISG) expression screening to reveal that 2′-5′-oligoadenylate synthetase 1 (OAS1), through ribonuclease L, potently inhibits severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). We show that a common splice-acceptor single-nucleotide polymorphism (Rs10774671) governs whether patients express prenylated OAS1 isoforms that are membrane-associated and sense-specific regions of SARS-CoV-2 RNAs or if they only express cytosolic, nonprenylated OAS1 that does not efficiently detect SARS-CoV-2. In hospitalized patients, expression of prenylated OAS1 was associated with protection from severe COVID-19, suggesting that this Antiviral defense is a major component of a protective Antiviral response.