1. Academic Validation
  2. A Phenotypic Screen Identifies Potent DPP9 Inhibitors Capable of Killing HIV-1 Infected Cells

A Phenotypic Screen Identifies Potent DPP9 Inhibitors Capable of Killing HIV-1 Infected Cells

  • ACS Chem Biol. 2022 Sep 16;17(9):2595-2604. doi: 10.1021/acschembio.2c00515.
Keith P Moore 1 Adam G Schwaid 1 Matthew Tudor 2 Sangho Park 3 Douglas C Beshore 4 Antonella Converso 4 William D Shipe 4 Rajan Anand 1 Ping Lan 1 Remond Moningka 1 Deborah M Rothman 1 Wanying Sun 1 An Chi 1 Ivan Cornella-Taracido 1 Gregory C Adam 3 Carolyn Bahnck-Teets 3 Steven S Carroll 3 John F Fay 3 Shih Lin Goh 3 Jeffrey Lusen 3 Shuo Quan 3 Silveria Rodriguez 3 Min Xu 3 Christine L Andrews 3 Cheng Song 3 Tracey Filzen 5 Jing Li 5 Kaspar Hollenstein 2 Daniel J Klein 2 Alfred Lammens 6 U-Ming Lim 7 Zhiyu Fang 8 Carolyn McHale 8 Yuan Li 8 Meiqing Lu 8 Tracy L Diamond 8 Bonnie J Howell 8 Paul Zuck 8 Carl J Balibar 8
Affiliations

Affiliations

  • 1 Chemical Biology, Merck & Co., Inc., Rahway, New Jersey 07065, United States.
  • 2 Computational and Structural Chemistry, Merck & Co., Inc., Rahway, New Jersey 07065, United States.
  • 3 Quantitative Biosciences, Merck & Co., Inc., Rahway, New Jersey 07065, United States.
  • 4 Discovery Chemistry, Merck & Co., Inc., Rahway, New Jersey 07065, United States.
  • 5 Screening and Protein Sciences, Merck & Co., Inc., Rahway, New Jersey 07065, United States.
  • 6 Proteros Biostructures GmbH, Bunsenstr, Martinsried 82152, Germany.
  • 7 Genome and Biomarker Sciences, Merck & Co., Inc., Rahway, New Jersey 07065, United States.
  • 8 Infectious Disease and Vaccines, Merck & Co., Inc., Rahway, New Jersey 07065, United States.
Abstract

Although current antiretroviral therapy can control HIV-1 replication and prevent disease progression, it is not curative. Identifying mechanisms that can lead to eradication of persistent viral reservoirs in people living with HIV-1 (PLWH) remains an outstanding challenge to achieving cure. Utilizing a phenotypic screen, we identified a novel chemical class capable of killing HIV-1 infected peripheral blood mononuclear cells. Tool compounds ICeD-1 and ICeD-2 (" i nducer of ce ll d eath-1 and 2"), optimized for potency and selectivity from screening hits, were used to deconvolute the mechanism of action using a combination of chemoproteomic, biochemical, pharmacological, and genetic approaches. We determined that these compounds function by modulating Dipeptidyl Peptidase 9 (DPP9) and activating the Caspase recruitment domain family member 8 (CARD8) inflammasome. Efficacy of ICeD-1 and ICeD-2 was dependent on HIV-1 protease activity and synergistic with efavirenz, which promotes premature activation of HIV-1 protease at high concentrations in infected cells. This in vitro synergy lowers the efficacious cell kill concentration of efavirenz to a clinically relevant dose at concentrations of ICeD-1 or ICeD-2 that do not result in complete DPP9 inhibition. These results suggest engagement of the pyroptotic pathway as a potential approach to eliminate HIV-1 infected cells.

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