2. Academic Validation
  3. Potent LeuBAT inhibitors designed in silico as next-generation duloxetine analogs for enhanced major depressive disorder treatment

Potent LeuBAT inhibitors designed in silico as next-generation duloxetine analogs for enhanced major depressive disorder treatment

  • Sci Rep. 2026 Jan 12;16(1):1622. doi: 10.1038/s41598-025-31085-z.
Mehdi Yoosefian # 1,  Hedieh Bayramzadeh 2,  Kasim Sakran Abass 3,  Tahmineh Mokhtari # 4
Affiliations

Affiliations

  • 1 Department of Chemistry, Graduate University of Advanced Technology, Kerman, Iran. [email protected].
  • 2 Department of Chemistry, Graduate University of Advanced Technology, Kerman, Iran.
  • 3 Department of Physiology, Biochemistry, and Pharmacology, College of Veterinary Medicine, University of Kirkuk, Kirkuk, 36001, Iraq.
  • 4 Department of Entomology and Nematology and UCD Comprehensive Cancer Center, University of California, Davis, CA, USA. [email protected].
  • # Contributed equally.
PMID: 41526406 DOI: 10.1038/s41598-025-31085-z
Abstract

Major Depressive Disorder (MDD), a leading global health challenge, urgently requires advanced therapeutics to mitigate its widespread impact. In this study, a series of duloxetine (DLX) analogs were designed and evaluated using a comprehensive in silico workflow incorporating quantum chemical calculations, ADMET profiling, molecular docking, and molecular dynamics (MD) simulations. Density Functional Theory (DFT) calculations at the B3LYP/6-311G level were performed to assess electronic properties such as the HOMO-LUMO energy gap, dipole moment, electronegativity, and chemical softness. Among the designed compounds, DLX48 demonstrated superior quantum descriptors while retaining the electronic characteristics of the parent molecule. ADMET predictions using ADMETlab 3.0 and ProTox-II revealed that DLX48 complies with major drug-likeness rules (Lipinski, Pfizer), exhibits improved aqueous solubility (Log S = - 3.21), optimal lipophilicity (Log P = 2.87), and shows no predicted hepatotoxicity or genotoxicity. Molecular docking against the LeuBAT (Δ13 mutant) transporter revealed a significant increase in binding affinity for DLX48 (-12.45 kcal/mol), with an inhibition constant (Ki) of 742.09 pM-indicating markedly enhanced target engagement compared to DLX. Long-timescale MD simulations (300 ns) confirmed the thermodynamic stability and favorable dynamic behavior of the DLX48-LeuBAT complex, supported by lower RMSD/RMSF values, persistent hydrogen bonding, reduced solvent exposure, and constrained conformational fluctuations. Collectively, these in silico findings nominate DLX48 as a promising central nervous system (CNS)-active lead compound with enhanced pharmacological efficacy and a reduced toxicity profile, warranting further preclinical investigation for the treatment of depression and anxiety disorders.

Keywords

ADMET prediction; Drug design; Duloxetine hydrochloride; Molecular dynamics simulation; Serotonin and noradrenaline reuptake inhibitors.

Figures
Products