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  2. Rational Design of PROTAC Degraders and Their Spatiotemporal Controlled Delivery for Enhanced Tumor Penetration and PD-L1 Protein Degradation

Rational Design of PROTAC Degraders and Their Spatiotemporal Controlled Delivery for Enhanced Tumor Penetration and PD-L1 Protein Degradation

  • J Med Chem. 2025 Nov 13;68(21):22665-22688. doi: 10.1021/acs.jmedchem.5c01632.
Qianqian Qi 1 Zhanyu Zhang 1 Xiang Ji 1 Dun Wang 1
Affiliations

Affiliation

  • 1 Key Laboratory of Structure-Based Drug Design & Discovery of Ministry of Education, Shenyang Pharmaceutical University, Shenyang 110016, China.
Abstract

While immune checkpoint blockade technologies targeting PD-1/PD-L1 have revolutionized Cancer therapy, conventional small-molecule inhibitors are still limited by their occupancy-driven mechanisms and require sustained high-dose exposure, which exacerbates off-target toxicity. To overcome this, we developed cyclic iRGD peptide-engineered PROTAC nanoparticles (iRP NPs) for precise PD-L1 degradation. This delivery system integrates three major modules: (1) the rationally designed PROTAC (CL-F-B1), which optimizes the E3 Ligase/PD-L1 binding domain spatial relationship to efficiently trigger PD-L1 ubiquitination (achieving 67.05% degradation at 5 μM over 24 h); (2) the tumor-penetrating iRGD peptide, binding αvβ3 integrins and inducing neuropilin-1-mediated transcytosis for deep tumor penetration; and (3) self-assembled NPs, prolonging circulation and stabilizing the construct. In the MC38 colon Cancer model, iRP NPs demonstrated superior tumor-specific accumulation and PD-L1 degradation, achieving 80.88% tumor regression. This strategy of coupling targeted degradation with smart delivery offers an efficient, precise, and accessible pathway for immune checkpoint modulation.

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