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  2. Oncometabolite fumarate impairs ATR-CHK1 signaling by succinating RPA1 in Fumarate Hydratase-deficient renal cell carcinoma cells

Oncometabolite fumarate impairs ATR-CHK1 signaling by succinating RPA1 in Fumarate Hydratase-deficient renal cell carcinoma cells

  • bioRxiv. 2025 Dec 10:2025.12.08.692638. doi: 10.64898/2025.12.08.692638.
Nian Liu 1 Changxian Shen 1 2 Tingting Zhou 1 Yu Zhou 1 Hang Yuan 1 Hongjie Bi 3 Yingying Wang 1 Xinyu Pei 1 Rui Su 3 Li Zheng 1 Yihui Shi 4 Binghui Shen 1
Affiliations

Affiliations

  • 1 Department of Cancer Genetics and Epigenetics, Beckman Research Institute, City of Hope, 1500 East Duarte Road, Duarte, California, CA91010, USA.
  • 2 Division of Surgical Oncology, Department of Surgery, Ohio State University Comprehensive Cancer Center and Ohio State University Wexner Medical Center, Columbus, OH43210, USA.
  • 3 Department of Systems Biology, Beckman Research Institute of City of Hope, Monrovia, CA91016, USA.
  • 4 California Pacific Medical Center Research Institute, Sutter Bay Hospitals, San Francisco, CA94107, USA.
Abstract

Abnormal accumulation of oncometabolite fumarate drives susceptibility in fumarate hydratase-deficient renal cell carcinoma (FH-dRCC), but the precise mechanisms remain not fully understood. In this study, we demonstrate that high fumarate levels impair activation of ATR-CHK1 signaling in response to replication stress and DNA damage. Mechanistically, fumarate modifies RPA1, an essential factor for ATR-CHK1 activation through succination, a post-translational modification. Succination of RPA1 occurs mainly at cysteine residues 481 and 486, which reduces its binding affinity for single-stranded DNA (ssDNA). RPA1 succination leads to deficient recruitment of TOPBP1 to ssDNA, resulting in attenuated Chk1 activation and defective cell cycle arrest in response to DNA damage. Succinated RPA1 compromises homologous recombination-mediated DNA repair. Our findings establish that fumarate-induced succination of RPA1 impairs DNA repair and cell cycle control, promoting genomic instability in FH-dRCC. This work reveals a novel mechanism by which oncometabolites contribute to genomic instability.

Keywords

ATR-CHK1 pathway; Fumarate hydratase-deficient renal cell carcinoma (FHdRCC); Replication Protein A1 (RPA1); Succination; genome instability.

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