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Lipid Nanoparticles (LNPs) for mRNA Delivery: Structure, Formulation, and Clinical Applications

Lipid Nanoparticles (LNPs) have emerged as a transformative platform for delivering mRNA therapeutics, enabling the rapid development of COVID-19 vaccines and advancing next-generation cancer vaccines. By encapsulating nucleic acids and protecting them from enzymatic degradation, LNPs ensure efficient delivery to target cells. Moreover, functional modifications of LNP surfaces allow precise targeting[1], making them a cornerstone technology in modern nucleic acid therapeutics.
Despite these advances, challenges remain, including the technical complexity of LNP design and formulation. In this article, we review the structural characteristics and nucleic acid delivery mechanisms of LNPs, methods for the formulation and characterization of mRNA-LNPs, clinical applications of LNP-based mRNA therapeutics, and the associated challenges and future perspectives.
Structural Features and Delivery Mechanism of LNPs
Preparation and Characterization of mRNA-LNPs
Clinical Applications and Future Directions of LNP Technology
Structural Features and Delivery Mechanism of LNPs
Preparation and Characterization of mRNA-LNPs
Clinical Applications and Future Directions of LNP Technology
Structural Features and Delivery Mechanism of LNPs
Fundamental Composition of LNPs
Lipid Nanoparticles (LNPs) typically consist of four components: ionizable lipids, cholesterol, PEGylated lipids (polyethylene glycol-modified lipids), and structural lipids (helper lipids). A typical LNP contains multiple components as well as the encapsulated payload.
Figure 1. Fundamental composition of lipid nanoparticles[2].
1. Ionizable Lipids
Ionizable cationic lipids are pH-sensitive and trigger the release of encapsulated mRNA. By neutralizing the mRNA’s charge, they improve nanoparticle biocompatibility and reduce non-specific binding to anionic biomolecules[3].
2. Cholesterol (sterol)
Cholesterol, a natural component of cell membranes, is mainly located in the LNP outer shell, serving as a structural lipid. It participates in endocytosis and endosomal escape, and structural modifications can alter LNP surface organization[4].
3. Phospholipids (helper lipids)
Phospholipids can self-assemble into lipid bilayers with high phase-transition temperatures, enhancing membrane stability. Located at the LNP periphery, they improve biodistribution and facilitate endosomal escape, promoting efficient intracellular delivery[2].
4. PEGylated Lipids
PEGylated lipids have hydrophilic heads and hydrophobic tails, forming an outer layer that reduces serum protein adsorption and phagocytic clearance, thereby extending circulation time[5]. They also allow surface functionalization, e.g., DSPE-PEG-Mal lipids can conjugate antibodies via maleimide groups[6].
Table 1. Lipid components of LNPs and their functions.
Lipid Components Feature Functions Examples
Ionizable lipid pH-sensitive; protonates at pH <6, neutral at pH ~7.4 Enhance biocompatibility; improve mRNA encapsulation; prevent non-specific binding ALC-0315 (HY-138170)
D-Lin-MC3-DMA (HY-112251)
Lipid 5 (HY-138171)
Phospholipid Self-assembles into bilayers; stabilizes membrane Facilitate endosomal escape; promote membrane fusion DSPC (HY-W040193)
DOPG (HY-141571)
Cholesterol Structural lipid in outer shell; participates in endocytosis and endosomal escape Modify surface organization; enhance particle stability; facilitate endosomal release Cholesterol (HY-N0322)
PEGylated lipid PEG lipids consist of hydrophilic heads and hydrophobic tails. Their molar percentage and molecular weight (400 Da–50 KDa) affects LNP size and zeta potential: high-MW PEG (20–50 KDa) aids low-MW drug delivery by reducing renal clearance, while low-MW PEG (1–5 KDa) is often used for conjugating high-MW drugs to reduce enzymatic degradation. Regulate half-life and cellular uptake; influence particle size; enable surface functionalization; reduce serum protein adsorption; extend in vivo circulation time DSPE-PEG2000 (HY-142979)
DSPE-PEG2000-Mal (HY-144004)
DSPE-PEG2000-Amine (HY-125924)
DSPE-PEG2000-iRGD (HY-172494)
DSPE-PEG2000-T7 (HY-172723)
DSPE-PEG5000-RVG29 (HY-172706)
Nucleic Acid Delivery Mechanism of LNPs
LNP structural features underpin their ability to transport nucleic acids into cells and release them intracellularly, primarily through endocytosis and endosomal escape.
Figure 2. Schematic diagram of intracellular transport and translation process of mRNA nanoparticle system complexes[7].
Cationic lipids first form electrostatic complexes with negatively charged mRNA, which are subsequently internalized by cells through endocytosis. Once inside, lysosomes may degrade exogenous macromolecules. As the endosomal environment acidifies, ionizable lipids become protonated, destabilizing the LNP bilayer and releasing the encapsulated mRNA. The released mRNA is then translated by ribosomes according to the central dogma, producing proteins that elicit immune responses and confer disease protection.
Advantages of Lipid Nanoparticle Delivery Systems
Low immunogenicity and excellent biocompatibility
High structural stability and resistance to deformation in vivo
High encapsulation efficiency for nucleic acids
Strong cell penetration ability and high transfection efficiency
Potent endosomal escape capability
Preparation and Characterization of mRNA-LNPs
The preparation of mRNA-LNPs exploits the self-assembly properties of LNP: negatively charged nucleic acids form electrostatic complexes with positively charged lipids, which then grow through hydrophobic interactions and van der Waals forces among the lipid components. LNPs can be prepared using various methods, such as lipid vesicle extrusion, lipid membrane rehydration, nanoprecipitation, and microfluidic mixing, with rapid mixing of aqueous and lipid solutions being the most commonly employed. After preparation, mRNA-LNPs are characterized for parameters such as size, charge, and encapsulation efficiency using multiple techniques. Fluorescent labeling may also be employed to track intracellular uptake and verify the presence of encapsulated mRNA. The preparation and characterization process is shown in the figure below:
Figure 3. Overview of formulation and evaluation protocols for mRNA-LNPs[8].
Preparation of mRNA-LNPs
All preparation protocols provided by our company are adapted from published Nature references[9], and we do not guarantee their practical application outcomes. Lipid ratios may be adjusted according to experimental goals and conditions.
Lipid Solutions:
1. Weigh 15 mg of DLin-MC3-DMA (MC3) using a balance, then add 200 μL of absolute ethanol to dissolve it, resulting in a concentration of 75 mg/mL.
2. Weigh 10 mg of DSPC using a balance, then add 1.0 mL of absolute ethanol to dissolve it, with a final concentration of 10 mg/mL.
3. Weigh 10 mg of cholesterol using a balance, add 1.0 mL of absolute ethanol to dissolve it, achieving a final concentration of 10 mg/mL.
4. Weigh 10 mg of DMG-PEG on a balance, and then dissolve it in 1.0 mL of pure ethanol to obtain a final concentration of 10 mg/mL.
Mixed Lipid Solution (Solution I):
Mix 13.3 μL of DLin-MC3-DMA solution, 24.6 μL of DSPC solution, 46.4 μL of cholesterol solution, and 11.7 μL of DMG-PEG solution thoroughly to obtain a clear mixed solution I. Mixed solution I contains 19 μg of total lipids per μL of absolute ethanol.
mRNA Payload:
Dissolve mRNA in 10 mM citrate buffer (10 mM, pH 4). The lipid mixed solution obtained in the above steps and the aqueous buffer containing mRNA are rapidly mixed to achieve a final weight ratio of 40/1 (total lipid/mRNA, wt/wt).
Note: The proportion of mRNA can be increased to reduce potential lipid toxicity.
Mixing Methods:
Three commonly used methods facilitate rapid mixing of the lipid solution with the mRNA solution: pipette mixing (for small-scale preparation), vortex mixing (for medium-scale preparation), and microfluidic mixing (for large-scale preparation).
A) Pipette Mixing (Small-Scale Preparation)
1. Add 16.8 μL of the above-obtained mixed solution I into a RNase-free 1.5 mL tube.
2. Add 1.2 μL of ethanol to the tube and mix thoroughly to obtain mixed solution II.
3. Take another RNase-free 1.5 mL tube, add 46 μL of citrate buffer (10 mM, pH 4), then add 8 μL of mRNA (1.0 mg/mL) to the tube and mix well.
4. Add 54 μL of mRNA buffer solution to mixed solution II obtained in step 2, followed immediately by rapid pipetting up and down for 20–30 s (manual mixing).
Note: The volume ratio of water to ethanol is 3:1. Mix by pipetting immediately after combining; otherwise, the activity of the mRNA-LNP mixture may be affected.
5. Incubate the solution obtained in step 4 at room temperature for 15 min.
6. Dialyze the above solution in 1× PBS using a dialysis tube (MWCO 3500) for more than 1 h to remove ethanol and acidic buffer.
7. After dialysis, transfer the solution to a RNase-free 1.5 mL tube and measure the volume.
8. Add 1× PBS solution to bring the total volume to 800 μL.
Note: The resulting solution can be stored short-term at 4°C.
B) Vortex Mixing (Medium-Scale Preparation)
1. Add 21 μL of the above-obtained mixed solution I into a RNase-free 1.5 mL tube.
2. Add 9 μL of ethanol to the tube and mix thoroughly to obtain mixed solution II.
3. Take another RNase-free 1.5 mL tube, add 80 μL of citrate buffer (10 mM, pH 4), then add 10 μL of mRNA (1.0 mg/mL) to the tube and mix well.
4. Set the vortex mixer to "ON" with the speed level at "1".
5. Vortex the mRNA buffer solution at medium speed on the vortex mixer, then quickly transfer 30 μL of mixed solution II into the vortexing solution, and vortex the resulting mixture for 20–30 s.
Note: The volume ratio of water to ethanol is 3:1. Mix immediately after combining; otherwise, the activity of the mRNA-LNP mixture may be affected.
6. Incubate the solution obtained in step 5 at room temperature for 15 min.
7. Dialyze the above solution in 1× PBS using a dialysis tube (MWCO 3500) for more than 1 h to remove ethanol and acidic buffer.
8. After dialysis, transfer the solution to a RNase-free 1.5 mL tube and measure the volume.
9. Add 1× PBS solution to bring the total volume to 1000 μL.
Note: The resulting solution can be stored short-term at 4°C.
C) Microfluidic Mixing (Large-Scale Preparation)
The specific operational protocol is highly instrument-dependent. It is recommended to refer to the official website instructions of the specific instrument used.
Characterization of LNPs
To ensure LNP quality and performance, key parameters such as particle size, polydispersity index (PDI), surface charge, and RNA encapsulation efficiency are routinely characterized.
Figure 4. Characterization parameters of LNPs and related detection instruments[10].
Clinical Applications and Future Perspectives of LNP Technology
Clinical Applications of mRNA-LNP Vaccines
LNP technology has been successfully employed in mRNA vaccine development, most prominently in COVID-19 vaccines (e.g., Comirnaty by Pfizer/BioNTech). These vaccines demonstrate high immunogenicity and have been widely used in global vaccination campaigns.
Table 2. Partial LNP-supported RNA vaccines and therapeutics beyond phase I clinical development[11].
Drug or vaccine name Developer(s) Disease indication Therapeutic class / strategy Highest development stage
Comirnaty (tozinameran) BioNTech, Pfizer, Acuitas SARS-CoV-2 Viral vaccine Approved
SpikeVax (elasomeran) Moderna SARS-CoV-2 Viral vaccine Approved
Onpattro (patisiran) Alnylam, Inex/Tekmira, Acuitas Transthyretin amyloidosis Gene silencing Approved
MK-3475 MSD, Moderna Non-small cell lung cancer Cancer vaccine III
mRNA-1273 GlaxoSmith-Kline Herpes zoster Viral vaccine III
qlRV Pfizer Influenza Viral vaccine III
ARCT-810-03 Arcturus OTC deficiency Protein replacement II
AZD8601 AstraZeneca Heart failure Protein expression II
BMS-986263 BMS Liver cirrhosis; liver fibrosis; NASH Gene silencing II
BNT151 BioNTech Solid tumours (advanced) Immunotherapy I/II
BNT142 BioNTech Solid tumours (advanced) Bispecific antibody I/II
OTX-2002 Omega Therapeutics Liver cancer; multiple cancers Epigenetic modifier I/II
Note: MCE can provide products for research use only. We do not sell to patients.
Future Perspectives of LNP Technology
Despite the advantages of LNP delivery systems, several challenges remain, such as potential cytotoxicity, limited targeting specificity, short circulation time, inefficient endosomal escape, and stringent storage requirements.
Optimizing LNP composition is one strategy to address these challenges. For example, partial replacement of ionizable lipids with trehalose lipids can reduce cytotoxicity while potentially conferring cardioprotective and anti-inflammatory effects.
Another key strategy involves precise targeting through surface modification of LNPs. Incorporation of modified lipid components, such as cholesterol-modified DP7, enables targeted delivery to dendritic cells (Figure 5). Similarly, LNPs composed of DSPE-PEG-Mal lipids can be conjugated with antibodies via maleimide chemistry to achieve tissue-, organ-, or cell-specific delivery.
Figure 5. Incorporation of cholesterol-modified DP7 into liposomal delivery systems enables the efficient delivery of mRNA to dendritic cells[12].
Summary
Lipid nanoparticles (LNPs) have emerged as a transformative platform for nucleic acid delivery, enabling efficient encapsulation, protection, and intracellular transport of mRNA. Their structural components—ionizable lipids, cholesterol, phospholipids, and PEGylated lipids—support endocytosis, endosomal escape, and effective cytoplasmic release, ensuring robust protein expression. LNP-based mRNA vaccines, including those for COVID-19, have achieved significant clinical progress.
Nevertheless, challenges such as cytotoxicity, limited targeting specificity, short circulation time, and stringent storage requirements remain. Strategies including lipid composition optimization and surface functionalization with ligands or antibodies aim to enhance safety, targeting, and delivery efficiency. Overall, LNPs represent a versatile and modular platform with broad potential in vaccines, gene therapy, and precision medicine.
Recommended Compounds
Category Cat. No. Drug Names
Raw Materials for LNP Composition HY-138170 ALC-0315
HY-112251 D-Lin-MC3-DMA
HY-138171 Lipid 5
HY-W040193 DSPC
HY-141571 DOPG
HY-N0322 Cholesterol
HY-140739 DSPE-PEG2000-Maleimide
HY-144009 DSPE-PEG-Folate, MW 3350
HY-W591476 m-PEG-thiol (MW 1000)
HY-142979 DSPE-PEG 2000
HY-125924 DSPE-PEG2000-Amine
HY-172279A DSPE-PEG2000-TAT
HY-172706 DSPE-PEG5000-RVG29
HY-172464 DSPE-PEG2000-cRGD
HY-172494 DSPE-PEG2000-iRGD
HY-172723 DSPE-PEG2000-T7
HY-172470 DSPE-PEG2000-GE11
OptiLNP RNA Transfection Reagent HY-K2019 OptiLNP RNA Transfection Reagent (Stem Cells)
HY-K2020 OptiLNP RNA Transfection Reagent (Primary Immune Cells)
HY-K2021 OptiLNP RNA Transfection Reagent (Immune Cells)
HY-K2022 In vivo OptiLNP RNA Transfection Reagent (Systemic Effect)
HY-K2023 In vivo OptiLNP RNA Transfection Reagent (Local Effect)
HY-K2024 OptiLNP RNA Transfection Reagent (Liver-targeted)
HY-K2025 OptiLNP RNA Transfection Reagent (Lung-targeted)