DDX39A - DExD-box helicase 39A Gene
Also Known as BAT1; DDXL; BAT1L; DDX39; URH49
Species: Homo sapiens
About DDX39A
This gene has 21 transcripts (splice variants), 283 orthologues and 38 paralogues. Broad expression in testis (RPKM 59.3), bone marrow (RPKM 58.2) and 24 other tissues.
Summary
This gene encodes a member of the DEAD box protein family. These proteins are characterized by the conserved motif Asp-Glu-Ala-Asp (DEAD) and are putative RNA helicases. They are implicated in a number of cellular processes involving alteration of RNA secondary structure, such as translation initiation, nuclear and mitochondrial splicing, and ribosome and spliceosome assembly. Based on their distribution patterns, some members of the DEAD box protein family are believed to be involved in embryogenesis, spermatogenesis, and cellular growth and division. This gene is thought to play a role in the prognosis of patients with gastrointestinal stromal tumors. A pseudogene of this gene is present on chromosome 13. Alternate splicing results in multiple transcript variants. Additional alternatively spliced transcript variants of this gene have been described, but their full-length nature is not known. [provided by RefSeq, Sep 2013]
DDX39A Products (1)
| mRNA | Protein | Name |
|---|---|---|
| NM_005804.4 | NP_005795.2 | ATP-dependent RNA helicase DDX39A |
| Molecular Function GO Annotation | Evidence | Références | Source |
|---|---|---|---|
| enables ATP hydrolysis activity |
EXP
EXP: Inferred from Experiment
|
20844015 | GOA |
| enables identical protein binding |
IPI
IPI: Inferred from physical interaction
|
25416956 | GOA |
| enables protein binding |
IPI
IPI: Inferred from physical interaction
|
14667819 | GOA |
| Biological Process GO Annotation | Evidence | Références | Source |
|---|---|---|---|
| involved in mRNA export from nucleus |
IGI
IGI: Inferred from genetic interaction
|
15047853 | GOA |
| involved in mRNA splicing, via spliceosome |
IGI
IGI: Inferred from genetic interaction
|
15047853 | GOA |
| Cellular Component GO Annotation | Evidence | Références | Source |
|---|---|---|---|
| colocalizes with cytoplasm |
IDA
IDA: Inferred from direct assay
|
21859714 | GOA |
| located in nucleus |
IDA
IDA: Inferred from direct assay
|
21859714 | GOA |
DDX39A Protein Structure
DEAD: DEAD/DEAH box helicase (69 - 234)
Helicase_C: Helicase conserved C-terminal domain (305 - 381)
- 0
- 100
- 200
- 300
- 400
- 427 a.a.
| Protein Preferred Names | Protein Names | |
|---|---|---|
|
ATP-dependent RNA helicase DDX39A |
|
DDX39A Protein-protein interaction Information
|
Type
|
Protein Name | Protein ID | Interactor | Interactor Species | Interactor ID | Detection Method | Références |
|---|---|---|---|---|---|---|---|
|
Intra
|
DDX39A | O00148 | UBE2I | Homo sapiens | Q7KZS0 | 32296183 | |
|
Intra
|
DDX39A | O00148 | UBE2I | Homo sapiens | Q7KZS0 | 32296183 | |
|
Intra
|
DDX39A | O00148 | UBE2I | Homo sapiens | Q7KZS0 | 32296183 | |
|
Intra
|
DDX39A | O00148 | CHTOP | Homo sapiens | Q9Y3Y2-3 | 32296183 | |
|
Intra
|
DDX39A | O00148 | CHTOP | Homo sapiens | Q9Y3Y2-3 | 32296183 | |
|
Intra
|
DDX39A | O00148 | CHTOP | Homo sapiens | Q9Y3Y2-3 | 32296183 | |
|
Intra
|
DDX39A | O00148 | RNF4 | Homo sapiens | P78317 | 32296183 | |
|
Intra
|
DDX39A | O00148 | RNF4 | Homo sapiens | P78317 | 32296183 | |
|
Intra
|
DDX39A | O00148 | RNF4 | Homo sapiens | P78317 | 32296183 | |
|
Intra
|
DDX39A | O00148 | SARNP | Homo sapiens | P82979 | 25416956 | |
|
Intra
|
DDX39A | O00148 | SARNP | Homo sapiens | P82979 | 16189514 | |
|
Intra
|
DDX39A | O00148 | ccsb_9919 | Homo sapiens | EBI-25847655 | 32814053 | |
|
Intra
|
DDX39A | O00148 | DDX39B | Homo sapiens | Q13838 | 32296183 | |
|
Intra
|
DDX39A | O00148 | DDX39B | Homo sapiens | Q13838 | 33961781 | |
|
Intra
|
DDX39A | O00148 | DDX39B | Homo sapiens | Q13838 | 32296183 | |
|
Intra
|
DDX39A | O00148 | DDX39A | Homo sapiens | O00148 | 32296183 | |
|
Intra
|
DDX39A | O00148 | DDX39B | Homo sapiens | Q13838 | 32296183 | |
|
Intra
|
DDX39A | O00148 | DDX39A | Homo sapiens | O00148 | 25416956 | |
|
Intra
|
DDX39A | O00148 | ccsb_9919 | Homo sapiens | EBI-25847655 | 32814053 | |
|
Intra
|
DDX39A | O00148 | DDX39A | Homo sapiens | O00148 | 32296183 | |
|
Intra
|
DDX39A | O00148 | ccsb_9919 | Homo sapiens | EBI-25847655 | 32814053 | |
|
Intra
|
DDX39A | O00148 | DDX39A | Homo sapiens | O00148 | 32296183 | |
|
Intra
|
DDX39A | O00148 | HSPB1 | Homo sapiens | P04792 | 32814053 | |
|
Intra
|
DDX39A | O00148 | HSPB1 | Homo sapiens | P04792 | 32814053 | |
|
Intra
|
DDX39A | O00148 | HSPB1 | Homo sapiens | P04792 | 32814053 | |
|
Intra
|
DDX39A | O00148 | HTT | Homo sapiens | P42858 | 32814053 | |
|
Intra
|
DDX39A | O00148 | HTT | Homo sapiens | P42858 | 32814053 | |
|
Intra
|
DDX39A | O00148 | HTT | Homo sapiens | P42858 | 32814053 | |
|
Intra
|
DDX39A | O00148 | h0yhg0_human | Homo sapiens | H0YHG0 | 25416956 | |
|
Intra
|
DDX39A | O00148 | TERF1 | Homo sapiens | P54274 | 21044950 | |
|
Intra
|
DDX39A | O00148 | SAT1 | Homo sapiens | P21673 | 25416956 | |
|
Intra
|
DDX39A | O00148 | WFS1 | Homo sapiens | O76024 | 32814053 | |
|
Intra
|
DDX39A | O00148 | WFS1 | Homo sapiens | O76024 | 32814053 | |
|
Intra
|
DDX39A | O00148 | WFS1 | Homo sapiens | O76024 | 32814053 |
Related Diseases
| Diseases | Alias | |
|---|---|---|
| Hairy Tongue |
|
Orthologs Information
| Species | Symbol | Source | ID |
|---|---|---|---|
| Bos taurus | DDX39A | VGNC | VGNC:27964 |
| Felis catus | DDX39A | VGNC | VGNC:61406 |
| Canis familiaris | DDX39A | VGNC | VGNC:39854 |
| Mus musculus | DDX39A | MGD | MGI:1915528 |
| Macaca mulatta | DDX39A | VGNC | VGNC:71651 |
| Rattus norvegicus | DDX39A | RGD | RGD:619920 |
| Others | DDX39A | NCBI |