Prkdc - protein kinase, DNA activated, catalytic polypeptide Gene
Also Known as p460; scid; slip; DNAPK; DNPK1; HYRC1; XRCC7; dxnph; DOXNPH; DNAPDcs; DNA-PKcs
Species: Mus musculus
About Prkdc
This gene has 2 transcripts (splice variants), 188 orthologues, 5 paralogues and is associated with 159 phenotypes. Ubiquitous expression in CNS E11.5 (RPKM 1.5), frontal lobe adult (RPKM 1.2) and 27 other tissues.
Summary
Enables DNA-dependent protein kinase activity; double-stranded DNA binding activity; and enzyme binding activity. Involved in several processes, including regulation of cellular protein metabolic process; regulation of hematopoietic stem cell differentiation; and regulation of hemopoiesis. Acts upstream of or within several processes, including DNA metabolic process; ectopic germ cell programmed cell death; and immune system development. Located in nucleus. Is expressed in several structures, including central nervous system; neural retina; and thymus primordium. Used to study severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, Nk cell-positive. Human ortholog(s) of this gene implicated in immunodeficiency 26. Orthologous to human PRKDC (protein kinase, DNA-activated, catalytic subunit). [provided by Alliance of Genome Resources, Apr 2022]
Prkdc Products (1)
| mRNA | Protein | Name |
|---|---|---|
| NM_011159.2 | NP_035289.2 | DNA-dependent protein kinase catalytic subunit |
| Molecular Function GO Annotation | Evidence | References | Source |
|---|---|---|---|
| enables DNA-dependent protein kinase activity |
IDA
IDA: Inferred from direct assay
|
23836881 | MGI |
| enables double-stranded DNA binding |
IDA
IDA: Inferred from direct assay
|
20150414 | MGI |
| enables enzyme binding |
IPI
IPI: Inferred from physical interaction
|
20972425 | MGI |
| enables protein binding |
IPI
IPI: Inferred from physical interaction
|
21266349 | MGI |
| Cellular Component GO Annotation | Evidence | References | Source |
|---|---|---|---|
| located in nucleus |
IDA
IDA: Inferred from direct assay
|
12604618 | MGI |
Prkdc Protein Structure
NUC194: pfam08163 (1812 - 2197)
DNAPKcs_CC5: pfam19704 (2208 - 2890)
FAT: pfam02259 (3023 - 3469)
TEL1: cl34875 (3439 - 4012)
PIKKc_DNA-PK: cd05172 (3718 - 4013)
FATC: pfam02260 (4096 - 4127)
- 0
- 700
- 1400
- 2100
- 2800
- 3500
- 4128 a.a.
| Protein Preferred Names | Protein Names | |
|---|---|---|
|
DNA-dependent protein kinase catalytic subunit |
|
|