Design, synthesis and docking studies of novel dipeptidyl boronic acid proteasome inhibitors constructed from αα- and αβ-amino acids

  • Bioorg Med Chem Lett. 2016 Apr 15;26(8):1958-62. doi: 10.1016/j.bmcl.2016.03.007.
Jingmiao Shi  1 Meng Lei  2 Wenkui Wu  3 Huayun Feng  2 Jia Wang  4 Shanshan Chen  4 Yongqiang Zhu  5 Shihe Hu  4 Zhaogang Liu  4 Cheng Jiang  6
Affiliations
  • 1. Jiang Su Key Laboratory of Drug Design and Optimization, China Pharmaceutical University, Nanjing 210009, China; Department of Medicinal Chemistry, School of Pharmacy, China Pharmaceutical University, Nanjing 210009, China.
  • 2. College of Science, Nanjing Forestry University, Nanjing 210037, China.
  • 3. College of Life Science, Nanjing Normal University, Nanjing 210023, China.
  • 4. Jiangsu Chia Tai Fenghai Pharmaceutical Co. Ltd, Nanjing 210037, China.
  • 5. College of Life Science, Nanjing Normal University, Nanjing 210023, China. Electronic address: [email protected].
  • 6. Jiang Su Key Laboratory of Drug Design and Optimization, China Pharmaceutical University, Nanjing 210009, China; Department of Medicinal Chemistry, School of Pharmacy, China Pharmaceutical University, Nanjing 210009, China. Electronic address: [email protected].
Abstract

A series of novel dipeptidyl boronic acid Proteasome inhibitors constructed from αα- and αβ-amino acids were designed and synthesized. Their structures were elucidated by (1)H NMR, (13)C NMR, LC-MS and HRMS. These compounds were evaluated for their β5 subunit inhibitory activities of human Proteasome. The results showed that dipeptidyl boronic acid inhibitors composed of αα-amino acids were as active as bortezomib. Interestingly, the activities of those derived from αβ-amino acids lost completely. Of all the inhibitors, compound 22 (IC50=4.82 nM) was the most potent for the inhibition of Proteasome activity. Compound 22 was also the most active against three MM cell lines with IC50 values less than 5 nM in inhibiting cell growth assays. Molecular docking studies displayed that 22 fitted very well in the β5 subunit active pocket of Proteasome.

Keywords
Cytotoxicity; Dipeptidyl boronic acid; Docking study; Proteasome inhibitor; Structure–activity relationship.