Design of Leucine-Rich Repeat Kinase 2 (LRRK2) Inhibitors Using a Crystallographic Surrogate Derived from Checkpoint Kinase 1 (CHK1)

  • J Med Chem. 2017 Nov 9;60(21):8945-8962. doi: 10.1021/acs.jmedchem.7b01186.
Douglas S Williamson  1 Garrick P Smith  2 Pamela Acheson-Dossang  1 Simon T Bedford  1 Victoria Chell  1 I-Jen Chen  1 Justus C A Daechsel  2 Zoe Daniels  1 Laurent David  2 Pawel Dokurno  1 Morten Hentzer  2 Martin C Herzig  2 Roderick E Hubbard  1 Jonathan D Moore  1 James B Murray  1 Samantha Newland  1 Stuart C Ray  1 Terry Shaw  1 Allan E Surgenor  1 Lindsey Terry  1 Kenneth Thirstrup  1 Yikang Wang  1 Kenneth V Christensen  2
Affiliations
  • 1. Vernalis (R&D) Ltd. , Granta Park, Great Abington, Cambridge, CB21 6GB, United Kingdom.
  • 2. H. Lundbeck A/S , Ottiliavej 9, 2500 Valby, Denmark.
Abstract

Mutations in leucine-rich repeat kinase 2 (LRRK2), such as G2019S, are associated with an increased risk of developing Parkinson's disease. Surrogates for the LRRK2 kinase domain based on checkpoint kinase 1 (Chk1) mutants were designed, expressed in insect cells infected with baculovirus, purified, and crystallized. X-ray structures of the surrogates complexed with known LRRK2 inhibitors rationalized compound potency and selectivity. The Chk1 10-point mutant was preferred, following assessment of surrogate binding affinity with LRRK2 inhibitors. Fragment hit-derived arylpyrrolo[2,3-b]pyridine LRRK2 inhibitors underwent structure-guided optimization using this crystallographic surrogate. LRRK2-pSer935 HEK293 IC50 data for 22 were consistent with binding to Ala2016 in LRRK2 (equivalent to Ala147 in Chk1 10-point mutant structure). Compound 22 was shown to be potent, moderately selective, orally available, and brain-penetrant in wild-type mice, and confirmation of target engagement was demonstrated, with LRRK2-pSer935 IC50 values for 22 in mouse brain and kidney being 1.3 and 5 nM, respectively.

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