Plasma membrane-associated ARAF condensates fuel RAS-related cancer drug resistance

  • Nat Chem Biol. 2025 Jan 27. doi: 10.1038/s41589-024-01826-8.
Wen Li  #  1 Xiaoxian Shi  #  1 Caiwei Tan  #  2 Zhaodi Jiang  3 Mingyi Li  1 Zhiheng Ji  4 Jing Zhou  1 Mengxin Luo  2 Zuyan Fan  1 Zhifan Ding  5 Yue Fang  1 Jun Sun  6 Junjun Ding  7 Huasong Lu  1 Weirui Ma  1 Wei Xie  8  9 Wenjing Su  10  11
Affiliations
  • 1. Zhejiang Key Laboratory of Molecular Cancer Biology, Life Sciences Institute, Zhejiang University, Hangzhou, China.
  • 2. Zhejiang University College of Pharmaceutical Sciences, Hangzhou, China.
  • 3. The National Institute of Biological Sciences and Tsinghua Institute of Multidisciplinary Biomedical Research, Tsinghua University, Beijing, China.
  • 4. The Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, China.
  • 5. Department of Urology, Sir Run Run Shaw Hospital, Zhejiang University School of Medicine, Hangzhou, China.
  • 6. Department of Thoracic Surgery and West China Biomedical Big Data Center, West China Hospital, Sichuan University, Chengdu, China.
  • 7. Key Laboratory for Stem Cells and Tissue Engineering, Ministry of Education, Zhongshan School of Medicine, Sun Yat-sen University, Guangzhou, China.
  • 8. Zhejiang University College of Pharmaceutical Sciences, Hangzhou, China. [email protected].
  • 9. The Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, China. [email protected].
  • 10. Zhejiang Key Laboratory of Molecular Cancer Biology, Life Sciences Institute, Zhejiang University, Hangzhou, China. [email protected].
  • 11. The Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, China. [email protected].
  • # Contributed equally.
Abstract

Raf protein kinases are major Ras effectors that function by phosphorylating MEK. Although all three Raf isoforms share a conserved Ras binding domain and bind to GTP-loaded Ras, only ARAF uniquely enhances Ras activity. Here we uncovered the molecular basis of ARAF in regulating Ras activation. The disordered N-terminal sequence of ARAF drives self-assembly, forming ARAF-RAS condensates tethered to the plasma membrane. These structures concentrate active Ras locally, impeding NF1-mediated negative regulation of Ras, thereby fostering receptor tyrosine kinase (RTK)-triggered Ras activation. In RAS-mutant tumors, loss of the ARAF N terminus sensitizes tumor cells to pan-RAF inhibition. In hormone-sensitive cancers, increased ARAF condensates drive endocrine therapy resistance, whereas ARAF depletion reverses RTK-dependent resistance. Our findings delineate ARAF-RAS protein condensates as distinct subcellular structures sustaining Ras activity and facilitating oncogenic Ras signaling. Targeting ARAF-RAS condensation may offer a strategy to overcome drug resistance in both wild-type and mutant ARAF-mediated scenarios.

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