Ceramide-induced Endoplasmic Reticulum Stress as a Targetable Vulnerability in Endocrine Therapy-Resistant Breast Cancer

  • bioRxiv. 2025 Aug 22:2025.08.18.670862. doi: 10.1101/2025.08.18.670862.
Purab Pal  1 Shweta Chitkara  2 Godwin K Sarpey  1 Fatimah Alani  1 Huiping Zhao  1 Malik Ata  3 Jun Qu  4 Rachel Schiff  5 Debra Tonetti  6 Geoffrey L Greene  7 Jonna Frasor  1 Gunes Ekin Atilla-Gokcumen  2 Jonathan L Coloff  1
Affiliations
  • 1. Department of Physiology and Biophysics, University of Illinois Chicago, IL, USA.
  • 2. Department of Chemistry, University at Buffalo, NY, USA.
  • 3. College of Medicine, University of Illinois Chicago, IL, USA.
  • 4. Department of Pharmaceutical Sciences, University at Buffalo, NY, USA.
  • 5. Lester and Sue Smith Breast Center, Baylor College of Medicine, TX, USA.
  • 6. Department of Pharmaceutical Sciences, University of Illinois Chicago, IL, USA.
  • 7. Ben May Department for Cancer Research, University of Chicago, Chicago, IL, USA.
Abstract

Despite the success of endocrine therapy (ET) in treating hormone receptor-positive breast Cancer, a significant proportion of patients relapse during or after treatment, making ET resistance a major clinical challenge. Previously we have shown that ET-resistant breast Cancer cells exhibit reduced ceramide levels and an increased sensitivity to ceramide-induced cell death. Here, we demonstrate that ceramides induce a distinct transcriptional reprogramming in ET-resistant cells, characterized by upregulation of endoplasmic reticulum stress (EnRS) pathways. Ceramide-induced EnRS is PERK-dependent and functionally linked to cell death in multiple models of ET resistance. Using a photoactivatable ceramide probe, we identify TRAM1 as a functionally important ceramide-interacting protein (CIP) in ET-resistant cells that correlates with worse relapse-free survival and a more aggressive breast Cancer phenotype in luminal breast Cancer patients. Additionally, knockdown of TRAM1 phenocopies ceramide action in ET resistance, thereby suggesting its role in mediating ceramide-induced lethal actions in ET resistance. Together, our findings reveal that ET-resistant breast Cancer cells are more sensitive to PERK-mediated EnRS as compared to their ET-sensitive counterparts. Ceramides can exploit this dependence by interacting with CIPs such as TRAM1, leading to PERK activation and consequential cell death preferentially in the ET-resistant breast Cancer models.

Keywords
Ceramide; Ceramide-interacting proteins; Endocrine therapy resistance; Endoplasmic reticulum stress; Luminal breast cancer; PERK; TRAM1.
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