Optimization of the In Vivo Potency of Pyrazolopyrimidine MALT1 Protease Inhibitors by Reducing Metabolism and Increasing Potency in Whole Blood

  • J Med Chem. 2020 Dec 10;63(23):14594-14608. doi: 10.1021/acs.jmedchem.0c01246.
Jean Quancard  1 Oliver Simic  1 Carole Pissot Soldermann  1 Reiner Aichholz  1 Markus Blatter  1 Martin Renatus  1 Paulus Erbel  1 Samu Melkko  1 Ralf Endres  1 Mickael Sorge  1 Laurence Kieffer  1 Trixie Wagner  1 Karen Beltz  1 Paul Mcsheehy  1 Markus Wartmann  1 Catherine H Régnier  1 Thomas Calzascia  1 Thomas Radimerski  1 Marc Bigaud  1 Andreas Weiss  1 Frédéric Bornancin  1 Achim Schlapbach  1
Affiliations
  • 1. Novartis Pharma AG, Novartis Institutes for BioMedical Research, Novartis Campus, CH-4056 Basel, Switzerland.
Abstract

The paracaspase MALT1 has gained increasing interest as a target for the treatment of subsets of lymphomas as well as autoimmune diseases, and there is a need for suitable compounds to explore the therapeutic potential of this target. Here, we report the optimization of the in vivo potency of pyrazolopyrimidines, a class of highly selective allosteric MALT1 inhibitors. High doses of the initial lead compound led to tumor stasis in an activated B-cell-like (ABC) diffuse large B-cell lymphoma (DLBCL) xenograft model, but this compound suffered from a short in vivo half-life and suboptimal potency in whole blood. Guided by metabolism studies, we identified compounds with reduced metabolic clearance and increased in vivo half-life. In the second optimization step, masking one of the hydrogen-bond donors of the central urea moiety through an intramolecular interaction led to improved potency in whole blood. This was associated with improved in vivo potency in a mechanistic model of B cell activation. The optimized compound led to tumor regression in a CARD11 mutant ABC-DLBCL lymphoma xenograft model.

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