Potent GCN2 Inhibitor Capable of Reversing MDSC-Driven T Cell Suppression Demonstrates In Vivo Efficacy as a Single Agent and in Combination with Anti-Angiogenesis Therapy

  • J Med Chem. 2022 Oct 13;65(19):12895-12924. doi: 10.1021/acs.jmedchem.2c00736.
Jeffrey J Jackson  1 Grant M Shibuya  1 Buvana Ravishankar  1 Lavanya Adusumilli  1 Delia Bradford  1 Dirk G Brockstedt  1 Cyril Bucher  1 Minna Bui  1 Cynthia Cho  1 Christoph Colas  1 Gene Cutler  1 Adrian Dukes  1 Xinping Han  1 Dennis X Hu  1 Scott Jacobson  1 Paul D Kassner  1 George E Katibah  1 Michelle Yoo Min Ko  1 Urvi Kolhatkar  1 Paul R Leger  1 Anqi Ma  1 Lisa Marshall  1 Jack Maung  1 Andrew A Ng  1 Akinori Okano  1 Deepa Pookot  1 Daniel Poon  1 Chandru Ramana  1 Maureen K Reilly  1 Omar Robles  1 Jacob B Schwarz  1 Anton A Shakhmin  1 Hunter P Shunatona  1 Raashi Sreenivasan  1 Parcharee Tivitmahaisoon  1 Mengshu Xu  1 Thant Zaw  1 David J Wustrow  1 Mikhail Zibinsky  1
Affiliations
  • 1. RAPT Therapeutics, 561 Eccles Avenue, South San Francisco, California94080, United States.
Abstract

General control nonderepressible 2 (GCN2) protein kinase is a cellular stress sensor within the tumor microenvironment (TME), whose signaling cascade has been proposed to contribute to immune escape in tumors. Herein, we report the discovery of cell-potent GCN2 inhibitors with excellent selectivity against its closely related Integrated Stress Response (ISR) family members heme-regulated inhibitor kinase (HRI), protein kinase R (PKR), and (PKR)-like endoplasmic reticulum kinase (PERK), as well as good kinome-wide selectivity and favorable PK. In mice, compound 39 engages GCN2 at levels ≥80% with an oral dose of 15 mg/kg BID. We also demonstrate the ability of compound 39 to alleviate MDSC-related T cell suppression and restore T cell proliferation, similar to the effect seen in MDSCs from GCN2 knockout mice. In the LL2 syngeneic mouse model, compound 39 demonstrates significant tumor growth inhibition (TGI) as a single agent. Furthermore, TGI mediated by anti-VEGFR was enhanced by treatment with compound 39 demonstrating the complementarity of these two mechanisms.

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