Identification of a novel Azaspirooxindolinone-based PROTAC for selective BTK degradation and enhanced anticancer activity

  • Bioorg Chem. 2025 Apr:157:108316. doi: 10.1016/j.bioorg.2025.108316.
Naveen Kumar Rampeesa  1 Rambabu Gundla  2 Gopal Mudasani  1 Sudhakar Tangallapalli  3 Sreenivasa Reddy Anugu  4 Soňa Gurská  5 Juan Bautista De Sanctis  5 Petr Džubák  5 Marián Hajdúch  5 Viswanath Das  6
Affiliations
  • 1. Department of Chemistry, School of Science, GITAM University, Hyderabad 502102, Telangana, India; Aragen Life Sciences Ltd, Medicinal Chemistry Laboratory Division, Survey, No: 125(Part) & 126, IDA Mallapur, Hyderabad 500076, India.
  • 2. Department of Chemistry, School of Science, GITAM University, Hyderabad 502102, Telangana, India. Electronic address: [email protected].
  • 3. Department of Chemistry, School of Science, GITAM University, Hyderabad 502102, Telangana, India.
  • 4. Aragen Life Sciences Ltd, Medicinal Chemistry Laboratory Division, Survey, No: 125(Part) & 126, IDA Mallapur, Hyderabad 500076, India.
  • 5. Institute of Molecular and Translational Medicine, Faculty of Medicine and Dentistry, Palacký University and University Hospital Olomouc, Hněvotínská 1333/5, 779 00 Olomouc, Czech Republic; Institute of Molecular and Translational Medicine, Czech Advanced Technologies and Research Institute, Palacký University Olomouc, Křížkovského 511/8, 779 00, Olomouc, Czech Republic.
  • 6. Institute of Molecular and Translational Medicine, Faculty of Medicine and Dentistry, Palacký University and University Hospital Olomouc, Hněvotínská 1333/5, 779 00 Olomouc, Czech Republic; Institute of Molecular and Translational Medicine, Czech Advanced Technologies and Research Institute, Palacký University Olomouc, Křížkovského 511/8, 779 00, Olomouc, Czech Republic. Electronic address: [email protected].
Abstract

Bruton's Tyrosine Kinase (Btk) is a key driver of hematological malignancies, autoimmune disorders, and neuroinflammation, making it an attractive therapeutic target. Proteolysis targeting chimeras (PROTACs) offer a novel strategy for Btk degradation via the E3 ubiquitin Ligase pathway. Here, we evaluated nine azaspirooxindolinone-based PROTAC derivatives for their cytotoxicity and BTK-targeting activity. Several compounds exhibited potent cytotoxicity against BTK-high RAMOS lymphoma cells without affecting non-cancer fibroblasts or normal T/B-cell lymphocytes. Among them, PROTAC 25 emerged as the most effective degraded, achieving a Dmax of 72.84 % and DC50 of 0.27 μM in a proteasome-dependent manner. Although PROTAC 25 was cytotoxic to IL-2-inducible T cell Kinase (Itk)-positive cells, Itk protein levels remained unaffected. Furthermore, kinase assays revealed that PROTAC 25 inhibited Btk kinase activity (IC₅₀ = 0.44 μM) with moderate selectivity over Itk (IC₅₀ = 2.16 μM). Notably, PROTAC 25 suppressed BTK-mediated downstream signaling in RAMOS cells, as evidenced by reduced phosphorylation of Btk and its downstream effector, p38 MAPK. These findings highlight PROTAC 25 as a promising Btk degrader with therapeutic potential and underscore the value of azaspirooxindolinone-based PROTACs in targeting BTK-driven diseases.

Keywords
Antiproliferative activity; Azaspirooxindolinone; Bruton's tyrosine kinase; IL-2-inducible T-cell kinase; Jurkat; PROTAC; Ramos.
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