NEDDylation Regulates CD8+ T-cell Metabolism and Antitumor Immunity

  • Cancer Immunol Res. 2025 Jul 2;13(7):1004-1021. doi: 10.1158/2326-6066.CIR-24-0127.
Borja Jiménez-Lasheras  #  1 ,  Paloma Velasco-Beltrán  #  1 ,  Leire Egia-Mendikute  1 ,  Lorena Pérez-Gutiérrez  1 ,  So Young Lee  1 ,  Ander de Blas  1 ,  Ana García-Del Río  1 ,  Samanta Romina Zanetti  1 ,  Asier Antoñana-Vildosola  1 ,  Adrián Barreira-Manrique  1 ,  Alexandre Bosch  1 ,  Jone Etxaniz-Díaz de Durana  1 ,  Endika Prieto-Fernández  2 ,  Marina Serrano-Maciá  3  4 ,  Naroa Goikoetxea-Usandizaga  3  4 ,  Mikel Azkargorta  5 ,  Félix Elortza  5 ,  Thomas Gruber  6 ,  Sebastian Peer  6  7 ,  Gottfried Baier  6 ,  Ashwin Woodhoo  8 ,  María Luz Martínez-Chantar  3  4 ,  Asis Palazon  1  9
Affiliations
  • 1. Cancer Immunology and Immunotherapy Laboratory, Center for Cooperative Research in Biosciences (CIC bioGUNE), Basque Research and Technology Alliance (BRTA), Derio, Spain.
  • 2. Tumor Immunology and Immunotherapy Laboratory, Vall d'Hebron Institute of Oncology (VHIO), Vall d'Hebron Barcelona Hospital Campus, Barcelona, Spain.
  • 3. Liver Disease Laboratory, Center for Cooperative Research in Biosciences (CIC bioGUNE), Basque Research and Technology Alliance (BRTA), Derio, Spain.
  • 4. CIBERehd, Instituto de Salud Carlos III, Madrid, Spain.
  • 5. Proteomics Platform, Center for Cooperative Research in Biosciences (CIC bioGUNE), Basque Research and Technology Alliance (BRTA), Carlos III Networked Proteomics Platform (ProteoRed-ISCIII) Derio, Spain.
  • 6. Department for Genetics, Institute of Cell Genetics, Medical University Innsbruck, Innsbruck, Austria.
  • 7. Internal Medicine V, Medical University Innsbruck, Innsbruck, Austria.
  • 8. Gene Regulatory Control in Disease Laboratory, Center for Research in Molecular Medicine and Chronic Diseases (CIMUS), Instituto de Investigación Sanitaria de Santiago de Compostela (IDIS), University of Santiago de Compostela, A Coruña, Spain.
  • 9. Ikerbasque, Basque Foundation for Science, Bilbao, Spain.
  • # Contributed equally.
Abstract

NEDDylation is a posttranslational modification whereby the ubiquitin-like molecule NEDD8 is attached to protein substrates in a process dependent on NEDD8-activating Enzyme regulatory subunit (NAE1). NEDDylation is emerging as a regulator of Cancer biology, but its precise role in antitumor immunity has not been thoroughly characterized. In this study, we examine the impact of NEDDylation in CD8+ T cell-mediated antitumor responses. Analysis of publicly available single-cell RNA Sequencing databases revealed that CD8+ tumor-infiltrating lymphocytes showed increased expression of NEDD8 during their differentiation into effector memory cells. In vitro activation of mouse and human CD8+ T cells drove the upregulation of the NEDDylation enzymatic pathway, resulting in an enrichment of NEDDylated proteins. In vivo tumor challenge assays demonstrated that CD8+ T cells lacking NAE1 exhibited reduced antitumor capability and a less activated phenotype with compromised differentiation into effector cells. Upregulating NEDDylation by knocking out deNEDDylase sentrin-specific Protease 8 increased the in vitro cytotoxic capability of CD8+ CAR T cells. In addition, LC MS/MS proteomic analyses of NAE1-deficient CD8+ T cells and CD8+ T cells treated with the NEDDylation inhibitor MLN4924 showed a pronounced impairment in metabolic pathways, including Glycolysis and Oxidative Phosphorylation. In this context, we validated Lactate Dehydrogenase A, α-enolase, and Hexokinase 1, which are relevant glycolytic Enzymes, as NEDD8 targets. In line with this, NEDDylation-deficient CD8+ T cells demonstrated reduced transcription, protein expression, and enzymatic activity of Lactate Dehydrogenase. In summary, we uncover NEDDylation as a critical regulator of CD8+ T cell-mediated antitumor immunity.

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