Oncogenic PIK3CA mutations shape an immunoregulatory microenvironment in mosaic overgrowth disorders

  • PNAS Nexus. 2026 May 13;5(6):pgag163. doi: 10.1093/pnasnexus/pgag163.
Ilaria Galasso  1  2  3 Charles Bayard  1  2  3 Camille Blériot  3  4 Sophia Ladraa  1  2  3 Wan Ting Kong  4 Rubina Cassaca  1  2  3 Clément Hoguin  1  2  3 Sanela Protic  1  2  3 Jérôme Megret  5 Nicolas Goudin  6 Nicolas Signolle  7 Jean-Yves Scoazec  8 Ivan Nemazanyy  9 Estelle Balducci  10 Patrick Villarese  10 Vahid Asnafi  1  3  10 Sylvie Fraitag  11 Nicolas Venteclef  3 Florent Ginhoux  4 Guillaume Canaud  1  2  3
Affiliations
  • 1. Université Paris Cité, 75006 Paris, France.
  • 2. Unité de Médecine Translationnelle et Thérapies Ciblées, Hôpital Necker-Enfants Malades, AP-HP, 75015 Paris, France.
  • 3. Institut National de la Santé et de la Recherche Médicale U1151, Institut Necker-Enfants Malades, 149 rue de Sèvres, 75015 Paris, France.
  • 4. INSERM U1015, Gustave Roussy Cancer Campus, 94085 Villejuif, France.
  • 5. Structure Fédérative de Recherche Necker, INSERM US24, CNRS UAR 3633, Institut Necker-Enfants Malades, 75015 Paris, France.
  • 6. Necker Bio-Image Analysis, INSERM US24/CNRS UMS 3633, 75015 Paris, France.
  • 7. Biopathology Department, Gustave Roussy Cancer Campus, 94085 Villejuif, France.
  • 8. Département de Biologie et Pathologie Médicale, Gustave Roussy Cancer Campus, 94085 Villejuif, France.
  • 9. Platform for Metabolic Analyses, Structure Fédérative de Recherche Necker, INSERM US24, CNRS UAR 3633, Institut Necker-Enfants Malades, 94085 Paris, France.
  • 10. Laboratoire d'oncologie Hématologie, Hôpital Necker-Enfants Malades, AP-HP, 75015 Paris, France.
  • 11. Service d'Anatomie Pathologique, Hôpital Necker-Enfants Malades, AP-HP, 75015 Paris, France.
Abstract

PIK3CA-related overgrowth spectrum (PROS) comprises a group of rare genetic disorders caused by de novo, mosaic, postzygotic gain-of-function mutations in the PIK3CA gene. These mutations arise during embryogenesis, affect multiple organ systems, and result in heterogeneous clinical phenotypes. We previously showed that primary cells derived from a PROS mouse model exhibit a metabolic shift toward aerobic glycolysis (a Warburg-like effect), accompanied by altered secretion of metabolites. Here, we observed that this metabolic reprogramming was associated with the up-regulation of key transcription factors, including cellular myelocytomatosis and hypoxia-inducible factor 1 alpha. PIK3CA hyperactivation induces a distinct microenvironment marked by metabolic dysregulation, extracellular matrix remodeling, increased cellular proliferation, elevated phosphorylated form of the histone variant H2AX levels, and enhanced macrophage infiltration, hallmarks commonly associated with increased lactate production. To further examine immune infiltration dynamics, we used a mouse model expressing a constitutively active PIK3CA mutation selectively in adipose tissue (AdipoCreER), a tissue frequently affected in PROS. Single-cell transcriptomics and flow cytometry profiling revealed that macrophages adopt an immunomodulatory phenotype, with increased infiltration of TREM2+ and Lyve1hiMHCIIlo macrophages, along with myeloid-derived suppressor cells, and a concurrent reduction in T-cell populations. These immune alterations parallel those observed in tumor microenvironments and may contribute to tissue overgrowth and impaired immune surveillance. Multiplex immunofluorescence analysis of tissue samples from individuals with PROS confirmed these findings, underscoring the translational relevance of the mouse model. Together, our results demonstrate that PIK3CA mutations in PROS profoundly remodel the tissue microenvironment and reprogram macrophage function in a manner reminiscent of tumor biology.

Keywords
PIK3CA-related overgrowth syndrome; Warburg like Tumor microenvironment; macrophages immune cell response.
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