CLN6 - CLN6 transmembrane ER protein Gene
Also Known as nclf; CLN4A; CLN6A; HsT18960
Species: Homo sapiens
About CLN6
This gene has 25 transcripts (splice variants), 192 orthologues and is associated with 6 phenotypes. Ubiquitous expression in bone marrow (RPKM 12.1), colon (RPKM 10.8) and 25 other tissues.
Summary
This gene is one of eight which have been associated with neuronal ceroid lipofuscinoses (NCL). Also referred to as Batten disease, NCL comprises a class of autosomal recessive, neurodegenerative disorders affecting children. The genes responsible likely encode proteins involved in the degradation of post-translationally modified proteins in lysosomes. The primary defect in NCL disorders is thought to be associated with lysosomal storage function. [provided by RefSeq, Oct 2008]
CLN6 Products (2)
| mRNA | Protein | Name |
|---|---|---|
| NM_001411068.1 | NP_001397997.1 | ceroid-lipofuscinosis neuronal protein 6 isoform 2 |
| NM_017882.3 | NP_060352.1 | ceroid-lipofuscinosis neuronal protein 6 isoform 1 |
| Molecular Function GO Annotation | Evidence | References | Source |
|---|---|---|---|
| enables lysophosphatidic acid binding |
IDA
IDA: Inferred from direct assay
|
18317235 | GOA |
| enables protein binding |
IPI
IPI: Inferred from physical interaction
|
17237713 | GOA |
| enables protein homodimerization activity |
IDA
IDA: Inferred from direct assay
|
15010453 | GOA |
| enables sulfatide binding |
IDA
IDA: Inferred from direct assay
|
18317235 | GOA |
| Biological Process GO Annotation | Evidence | References | Source |
|---|---|---|---|
| involved in cholesterol metabolic process |
IMP
IMP: Inferred from mutant phenotype
|
16857350 | GOA |
| involved in ganglioside metabolic process |
IMP
IMP: Inferred from mutant phenotype
|
16857350 | GOA |
| involved in glycosaminoglycan metabolic process |
IMP
IMP: Inferred from mutant phenotype
|
16857350 | GOA |
| involved in lysosomal lumen acidification |
IMP
IMP: Inferred from mutant phenotype
|
11722572 | GOA |
| involved in positive regulation of proteolysis |
IMP
IMP: Inferred from mutant phenotype
|
15010453 | GOA |
| Cellular Component GO Annotation | Evidence | References | Source |
|---|---|---|---|
| located in early endosome |
IDA
IDA: Inferred from direct assay
|
17237713 | GOA |
| located in endoplasmic reticulum |
IDA
IDA: Inferred from direct assay
|
15265688 | GOA |
| located in endoplasmic reticulum lumen |
IDA
IDA: Inferred from direct assay
|
15010453 | GOA |
| located in membrane raft |
IDA
IDA: Inferred from direct assay
|
17237713 | GOA |
CLN6 Protein Structure
CLN6: Ceroid-lipofuscinosis neuronal protein 6 (28 - 309)
- 0
- 100
- 200
- 311 a.a.
| Protein Preferred Names | Protein Names | |
|---|---|---|
|
ceroid-lipofuscinosis neuronal protein 6 |
|
CLN6 Protein-protein interaction Information
|
Type
|
Protein Name | Protein ID | Interactor | Interactor Species | Interactor ID | Detection Method | References |
|---|---|---|---|---|---|---|---|
|
Intra
|
CLN6 | Q9NWW5 | TEX264 | Homo sapiens | Q9Y6I9 | 32296183 | |
|
Intra
|
CLN6 | Q9NWW5 | CISD2 | Homo sapiens | Q8N5K1 | 32296183 | |
|
Intra
|
CLN6 | Q9NWW5 | CISD2 | Homo sapiens | Q8N5K1 | 32296183 | |
|
Intra
|
CLN6 | Q9NWW5 | TMEM237 | Homo sapiens | Q96Q45-2 | 32296183 | |
|
Intra
|
CLN6 | Q9NWW5 | TMEM237 | Homo sapiens | Q96Q45-2 | 32296183 | |
|
Intra
|
CLN6 | Q9NWW5 | LRRC25 | Homo sapiens | Q8N386 | 32296183 | |
|
Intra
|
CLN6 | Q9NWW5 | LRRC25 | Homo sapiens | Q8N386 | 32296183 | |
|
Intra
|
CLN6 | Q9NWW5 | ARL13B | Homo sapiens | Q3SXY8 | 32296183 | |
|
Intra
|
CLN6 | Q9NWW5 | ARL13B | Homo sapiens | Q3SXY8 | 32296183 | |
|
Intra
|
CLN6 | Q9NWW5 | SLC22A23 | Homo sapiens | A1A5C7-2 | 32296183 | |
|
Intra
|
CLN6 | Q9NWW5 | SLC22A23 | Homo sapiens | A1A5C7-2 | 32296183 | |
|
Intra
|
CLN6 | Q9NWW5 | FNDC9 | Homo sapiens | Q8TBE3 | 32296183 | |
|
Intra
|
CLN6 | Q9NWW5 | FNDC9 | Homo sapiens | Q8TBE3 | 32296183 | |
|
Intra
|
CLN6 | Q9NWW5 | TMPRSS2 | Homo sapiens | O15393-2 | 32296183 | |
|
Intra
|
CLN6 | Q9NWW5 | TMPRSS2 | Homo sapiens | O15393-2 | 32296183 | |
|
Intra
|
CLN6 | Q9NWW5 | RIC3 | Homo sapiens | Q7Z5B4-5 | 32296183 | |
|
Intra
|
CLN6 | Q9NWW5 | RIC3 | Homo sapiens | Q7Z5B4-5 | 32296183 | |
|
Intra
|
CLN6 | Q9NWW5 | SLC30A4 | Homo sapiens | O14863 | 32296183 | |
|
Intra
|
CLN6 | Q9NWW5 | SLC30A4 | Homo sapiens | O14863 | 32296183 | |
|
Intra
|
CLN6 | Q9NWW5 | GJA8 | Homo sapiens | P48165 | 32296183 | |
|
Intra
|
CLN6 | Q9NWW5 | GJA8 | Homo sapiens | P48165 | 32296183 | |
|
Intra
|
CLN6 | Q9NWW5 | EVI2B | Homo sapiens | P34910-2 | 32296183 | |
|
Intra
|
CLN6 | Q9NWW5 | EVI2B | Homo sapiens | P34910-2 | 32296183 | |
|
Intra
|
CLN6 | Q9NWW5 | CPLX4 | Homo sapiens | Q7Z7G2 | 32296183 | |
|
Intra
|
CLN6 | Q9NWW5 | CPLX4 | Homo sapiens | Q7Z7G2 | 32296183 | |
|
Intra
|
CLN6 | Q9NWW5 | FAM209A | Homo sapiens | Q5JX71 | 32296183 | |
|
Intra
|
CLN6 | Q9NWW5 | FAM209A | Homo sapiens | Q5JX71 | 32296183 | |
|
Intra
|
CLN6 | Q9NWW5 | CYBC1 | Homo sapiens | Q9BQA9 | 32296183 | |
|
Intra
|
CLN6 | Q9NWW5 | CYBC1 | Homo sapiens | Q9BQA9 | 32296183 | |
|
Intra
|
CLN6 | Q9NWW5 | LIME1 | Homo sapiens | Q9H400 | 32296183 | |
|
Intra
|
CLN6 | Q9NWW5 | LIME1 | Homo sapiens | Q9H400 | 32296183 | |
|
Intra
|
CLN6 | Q9NWW5 | CLEC10A | Homo sapiens | Q8IUN9 | 32296183 | |
|
Intra
|
CLN6 | Q9NWW5 | CLEC10A | Homo sapiens | Q8IUN9 | 32296183 | |
|
Intra
|
CLN6 | Q9NWW5 | GORAB | Homo sapiens | Q5T7V8 | 32296183 | |
|
Intra
|
CLN6 | Q9NWW5 | GORAB | Homo sapiens | Q5T7V8 | 32296183 | |
|
Intra
|
CLN6 | Q9NWW5 | CREB3L1 | Homo sapiens | Q96BA8 | 32296183 | |
|
Intra
|
CLN6 | Q9NWW5 | CREB3L1 | Homo sapiens | Q96BA8 | 32296183 | |
|
Intra
|
CLN6 | Q9NWW5 | STX1A | Homo sapiens | Q16623 | 32296183 | |
|
Intra
|
CLN6 | Q9NWW5 | STX1A | Homo sapiens | Q16623 | 32296183 | |
|
Intra
|
CLN6 | Q9NWW5 | TMEM139 | Homo sapiens | Q8IV31 | 32296183 | |
|
Intra
|
CLN6 | Q9NWW5 | TMEM139 | Homo sapiens | Q8IV31 | 32296183 | |
|
Intra
|
CLN6 | Q9NWW5 | CLDN7 | Homo sapiens | O95471 | 32296183 | |
|
Intra
|
CLN6 | Q9NWW5 | CLDN7 | Homo sapiens | O95471 | 32296183 | |
|
Intra
|
CLN6 | Q9NWW5 | CD79A | Homo sapiens | P11912 | 32296183 | |
|
Intra
|
CLN6 | Q9NWW5 | CD79A | Homo sapiens | P11912 | 32296183 | |
|
Intra
|
CLN6 | Q9NWW5 | KIR2DL3 | Homo sapiens | P43628 | 32296183 | |
|
Intra
|
CLN6 | Q9NWW5 | KIR2DL3 | Homo sapiens | P43628 | 32296183 | |
|
Intra
|
CLN6 | Q9NWW5 | EBAG9 | Homo sapiens | O00559 | 32296183 | |
|
Intra
|
CLN6 | Q9NWW5 | EBAG9 | Homo sapiens | O00559 | 32296183 |
Related Diseases
| Diseases | Alias | |
|---|---|---|
| Ceroid Lipofuscinosis, Neuronal, 6a |
|
|
| Ceroid Lipofuscinosis, Neuronal, 6b |
|
|
| Nervous System Disease |
|
|
| Neuronal Ceroid Lipofuscinosis |
|
|
| Congenital Nervous System Abnormality |
|
|
| Adult Neuronal Ceroid Lipofuscinosis |
|
|
| Neuronal Ceroid-Lipofuscinoses |
|
|
| Ceroid Lipofuscinosis, Neuronal, 2 |
|
|
| Ceroid Lipofuscinosis, Neuronal, 8, Northern Epilepsy Variant |
|
|
| Ceroid Lipofuscinosis, Neuronal, 11 |
|
|
| Spastic Ataxia |
|
|
| Progressive Myoclonus Epilepsy 3 |
|
|
| Ceroid Lipofuscinosis, Neuronal, 3 |
|
|
| Ceroid Lipofuscinosis, Neuronal, 13 |
|
|
| Photosensitive Epilepsy |
|
|
| Unverricht-Lundborg Syndrome |
|
|
| Spinocerebellar Ataxia, Autosomal Recessive 7 |
|
|
| Ceroid Lipofuscinosis, Neuronal, 10 |
|
|
| Progressive Myoclonus Epilepsy |
|
|
| Visual Epilepsy |
|
|
| Epilepsy |
|
|
| Ceroid Lipofuscinosis, Neuronal, 7 |
|
|
| Scheie Syndrome |
|
|
| Mucopolysaccharidosis, Type Iiib |
|
|
| Glycoproteinosis |
|
|
| Mucopolysaccharidosis, Type Iiia |
|
|
| Spinal Muscular Atrophy, Type I |
|
|
| Mucopolysaccharidosis Iii |
|
|
| Spinal Muscular Atrophy With Progressive Myoclonic Epilepsy |
|
|
| Gm2 Gangliosidosis |
|
|
| Myoclonic Epilepsy Of Lafora |
|
|
| Tay-Sachs Disease |
|
|
| Gangliosidosis |
|
|
| Gm1 Gangliosidosis |
|
|
| Aspartylglucosaminuria |
|
|
| Mucolipidosis |
|
|
| Early Myoclonic Encephalopathy |
|
|
| Neonatal Period Electroclinical Syndrome |
|
|
| Childhood Spinal Muscular Atrophy |
|
|
| Lipid Storage Disease |
|
|
| Metachromatic Leukodystrophy |
|
|
| Fundus Dystrophy |
|
|
Orthologs Information
| Species | Symbol | Source | ID |
|---|---|---|---|
| Canis familiaris | CLN6 | VGNC | VGNC:39351 |
| Mus musculus | CLN6 | MGD | MGI:2159324 |
| Bos taurus | CLN6 | VGNC | VGNC:27453 |
| Felis catus | CLN6 | VGNC | VGNC:60968 |
| Macaca mulatta | CLN6 | VGNC | VGNC:82126 |
| Rattus norvegicus | CLN6 | RGD | RGD:1309714 |
| Others | CLN6 | NCBI |