YTHDF3 facilitates translation and decay of N6-methyladenosine-modified RNA

Cell Res. 2017 Mar;27(3):315-328. doi: 10.1038/cr.2017.15.

Hailing Shi ¹ ², Xiao Wang ¹ ², Zhike Lu ¹ ², Boxuan S Zhao ¹ ², Honghui Ma ¹ ², Phillip J Hsu ¹ ² ³, Chang Liu ¹ ², Chuan He ¹ ² ⁴

Affiliations

1 Department of Chemistry and Institute for Biophysical Dynamics, The University of Chicago, Chicago, IL 60637, USA.
2 Howard Hughes Medical Institute, The University of Chicago, Chicago, IL 60637, USA.
3 Committee on Immunology, The University of Chicago, Chicago, IL 60637, USA.
4 Department of Biochemistry and Molecular Biology, The University of Chicago, Chicago, IL 60637, USA.

PMID: 28106072 DOI: 10.1038/cr.2017.15

Abstract

N⁶-methyladenosine (m⁶A) is the most abundant internal modification in eukaryotic messenger RNAs (mRNAs), and plays important roles in cell differentiation and tissue development. It regulates multiple steps throughout the RNA life cycle including RNA processing, translation, and decay, via the recognition by selective binding proteins. In the cytoplasm, m⁶A binding protein YTHDF1 facilitates translation of m⁶A-modified mRNAs, and YTHDF2 accelerates the decay of m⁶A-modified transcripts. The biological function of YTHDF3, another cytoplasmic m⁶A binder of the YTH (YT521-B homology) domain family, remains unknown. Here, we report that YTHDF3 promotes protein synthesis in synergy with YTHDF1, and affects methylated mRNA decay mediated through YTHDF2. Cells deficient in all three YTHDF proteins experience the most dramatic accumulation of m⁶A-modified transcripts. These results indicate that together with YTHDF1 and YTHDF2, YTHDF3 plays critical roles to accelerate metabolism of m⁶A-modified mRNAs in the cytoplasm. All three YTHDF proteins may act in an integrated and cooperative manner to impact fundamental biological processes related to m⁶A RNA methylation.

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