De novo pyrimidine biosynthetic complexes support cancer cell proliferation and ferroptosis defence

  • Nat Cell Biol. 2023 Jun 8. doi: 10.1038/s41556-023-01146-4.
Chuanzhen Yang  #  1 Yiliang Zhao  #  1 Liao Wang  #  1  2 Zihao Guo  1 Lingdi Ma  1 Ronghui Yang  3 Ying Wu  1 Xuexue Li  3 Jing Niu  1 Qiaoyun Chu  1 Yanxia Fu  1 Binghui Li  4  5  6
Affiliations
  • 1. Department of Biochemistry and Molecular Biology, School of Basic Medical Sciences, Capital Medical University, Beijing, China.
  • 2. Shanxi Bethune Hospital, Shanxi Academy of Medical Sciences, Tongji Shanxi Hospital, Third Hospital of Shanxi Medical University, Taiyuan, China.
  • 3. Beijing Institute of Hepatology, Beijing Youan Hospital, Capital Medical University, Beijing, China.
  • 4. Department of Biochemistry and Molecular Biology, School of Basic Medical Sciences, Capital Medical University, Beijing, China. [email protected].
  • 5. Beijing Institute of Hepatology, Beijing Youan Hospital, Capital Medical University, Beijing, China. [email protected].
  • 6. Department of Cancer Cell Biology and National Clinical Research Center for Cancer, Tianjin Medical University Cancer Institute and Hospital, Tianjin, China. [email protected].
  • # Contributed equally.
Abstract

De novo pyrimidine biosynthesis is achieved by cytosolic carbamoyl-phosphate synthetase II, aspartate transcarbamylase and dihydroorotase (CAD) and uridine 5'-monophosphate synthase (UMPS), and mitochondrial Dihydroorotate Dehydrogenase (DHODH). However, how these Enzymes are orchestrated remains enigmatical. Here we show that cytosolic glutamate oxaloacetate transaminase 1 clusters with CAD and UMPS, and this complex then connects with DHODH, which is mediated by the mitochondrial outer membrane protein voltage-dependent anion-selective channel protein 3. Therefore, these proteins form a multi-enzyme complex, named 'pyrimidinosome', involving AMP-activated protein kinase (AMPK) as a regulator. Activated AMPK dissociates from the complex to enhance pyrimidinosome assembly but inactivated UMPS, which promotes DHODH-mediated Ferroptosis defence. Meanwhile, Cancer cells with lower expression of AMPK are more reliant on pyrimidinosome-mediated UMP biosynthesis and more vulnerable to its inhibition. Our findings reveal the role of pyrimidinosome in regulating pyrimidine flux and Ferroptosis, and suggest a pharmaceutical strategy of targeting pyrimidinosome in Cancer treatment.