Rhobo6
Rhobo6 is a cell-impermeable glycan-binding, fluorescence turn-on imaging agent with a Kd of 53 µM for glycans. Rhobo6 reversibly binds target glycans and enables wash-free live ECM visualization. Rhobo6 can be used for fluorescent labeling of ECM in living samples or decellularized tissues (Ex/Em = 488/561 nm).
For research use only. We do not sell to patients.
- Formula: C35H28B2N2O9
- Molecular Weight:642.23
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Storage:
Please store the product under the recommended conditions in the Certificate of Analysis.
Biological Activity
Guidelines (The following is our recommended protocol; this protocol serves as a guideline only and should be modified to suit your specific needs.)
1. Preparation of Stock and Working Solutions
a. Prepare a 10 mM Rhobo6 stock solution in anhydrous DMSO.
b. Dilute the stock solution using pre-warmed, serum-free cell culture medium or PBS to prepare a 5 μM Rhobo6 working solution.
Note: Please adjust the concentration of the Rhobo6 working solution according to your specific experimental requirements, and prepare it immediately before use.
2. Cell Staining (Suspension Cells)
a. Centrifuge to harvest the cells, then wash twice with PBS (5 minutes per wash). Adjust the cell density to 1×106 cells/mL.
b. Add 1 mL of the Rhobo6 working solution and incubate at room temperature for 1 hour.
c. Centrifuge at 400 × g for 3–4 minutes, and discard the supernatant.
d. Wash the cells twice with PBS (5 minutes per wash).
e. Resuspend the cells in 1 mL of serum-free medium or PBS, then observe using a fluorescence microscope or flow cytometer.
3. Cell Staining (Adherent Cells)
a. Culture adherent cells on sterile coverslips.
b. Remove the coverslips from the culture medium and aspirate any excess medium.
c. Add the working solution, gently agitating to ensure it completely covers the cells, and incubate at room temperature for 1 hour.
d. Aspirate the dye working solution, then wash 2–3 times with culture medium (5 minutes per wash). Observe using a fluorescence microscope or flow cytometer.
Note: Rhobo6 should only be used for live cell staining. If analysis via flow cytometry is required, the cells must be detached using trypsin digestion and resuspended prior to staining.
Rhobo6 (5 μM) turns on and red shifts upon binding diols in cell-free solution, with enhanced molar absorptivity, quantum yield, and a fluorescence contrast of 7.3 using 561 nm excitation and 575 nm emission detection[1].
Rhobo6 (5 μM) exhibits broad binding specificity for glycans in a cell-free array assay, with reduced binding to negatively charged glycans[1].
Rhobo6 (5 μM; 1 h) labels purified ECM components in vitro in a glycan-dependent manner, with broad coverage of fibrous, network-forming, proteoglycan, and polysaccharide ECM constituents[1].
Rhobo6 (1-50 μM; 3 h) binds to collagen I gels in vitro with an apparent Kd of 53 μM, reaching near-maximum signal within 60 min at 5 μM[1].
Rhobo6 (5 μM; 9.6 h) exhibits negligible photobleaching when bound to aggrecan-coated substrates in vitro over extended imaging periods[1].
Rhobo6 (5 μM; 1 h at 37 °C) labels glycan-rich cell surfaces of MUC1ΔCT-expressing MCF10A cells in a glycan-dependent manner, with distinguishable fluorescence lifetimes for free and bound dye populations[1].
Rhobo6 (5 μM; 48 h) labels ECM and tracks ECM remodeling during 4T1 breast cancer spheroid invasion in vitro without impairing invasive potential, revealing fiber orientation changes associated with invasion[1].
MedChemExpress (MCE) has not independently confirmed the accuracy of these methods. They are for reference only.
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Cell Line:MCF10A mammary epithelial cells (with doxycycline-inducible MUC1ΔCT expression)
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Concentration:5 μM
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Incubation Time:1 h
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Result:Labeled the cell surfaces of MUC1ΔCT-expressing MCF10A cells, with signal ablated by mucinase pretreatment.
Showed two populations via FLIM: free Rhobo6 with a fluorescence lifetime of ~2 ns, and bound Rhobo6 with a lifetime of ~3.5 ns.
a. Take 10 mM Rhobo6 (dissolved in DMSO) stock solution and dilute to 1 mM working solution with sterile PBS.
b. Sterilize the working solution through a 0.2 μm filter. Use immediately or in single-use aliquots and store at -20 °C, avoiding freeze-thaw cycles and exposure to sunlight.
c. Inject Rhobo6 working solution via the retroorbital vein at a dose of 3.5 mg/kg of animal body weight 15–30 minutes before imaging.
Note: Rhobo6 kinetic studies should be performed for each animal model to determine peak signal time.
Rhobo6 (3.5 mg/kg; i.v. [retro-orbital]; single dose) enables broad, wash-free visualization of ECM structures across most mouse tissues following retro-orbital injection, with no apparent toxicity[1].
Rhobo6 (i.v. [retro-orbital]; single dose) enables intravital visualization of tumor-associated ECM remodeling, distinguishing altered ECM architecture in breast cancer lesions from normal mammary gland ECM[1].
Rhobo6 (100 µM; injectable solution; single injection) labels extracellular and luminal structures in C. elegans without intracellular accumulation[1].
Rhobo6 (5 µM; bath immersion in tank water; single exposure) enables visualization of ECM structures in zebrafish larvae during wound healing when delivered via tail incision[1].
MedChemExpress (MCE) has not independently confirmed the accuracy of these methods. They are for reference only.
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Animal Model:C57BL/6J (8- to 12-week-old female)[1]
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Dosage:3.5 mg/kg
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Administration:i.v. [retro-orbital]; single dose
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Result:Labeled extracellular matrix (ECM) structures in all excised tissues except brain.
Labeled ECM structures included skeletal muscle fascia and basal lamina, tracheal cartilage rings and submucosal basement membranes, pancreatic ducts and acinar tissue ECM, kidney tubule ECM, jejunal villi and muscularis mucosa fascia, tendon fascia, liver superficial fascia, gallbladder arteriole ECM, lung alveolar ECM, salivary gland epithelial bud surrounding ECM, and skin collagen and elastin fibers.
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Animal Model:N2, NK2443 [nid-1(qy38[nid-1::mNG+loxP]) V] (young to mid-adult)[1]
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Dosage:100 µM
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Administration:injectable solution; single injection; 10 pL volume per gonad arm
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Result:Labeled structures including yolk, eggshells, vulva, and oviduct.
Concentrated at the spermathecal-uterine valve within the oviduct lumen in NK2443 worms expressing Nidogen-1-GFP, with no labeling of the oviduct basement membrane or worm cytosol.
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Animal Model:Danio rerio (8 days post-fertilization; sex undetermined)[1]
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Dosage:5 µM
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Administration:bath immersion in tank water; single exposure; incision-facilitated delivery
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Result:Visualized structural ECM components in the tail and notochord during wound healing time-lapse imaging.
Chemical Information
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Molecular Weight 642.23
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Formula C35H28B2N2O9
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SMILES
O=C([O-])C1=CC=C(C(O)=O)C=C1C2=C3C=C/C(C=C3OC4=C2C=CC(NCC5=CC=CC=C5B(O)O)=C4)=[NH+]\CC6=CC=CC=C6B(O)O
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Shipping
Room temperature in continental US; may vary elsewhere.
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Storage
Please store the product under the recommended conditions in the Certificate of Analysis.
Purity & Documentation
References
Calculators
Concentration (start) × Volume (start) = Concentration (final) × Volume (final)