Pradimicin A
Pradimicin A is a potent antifungal agent with a minimum inhibitory concentration (MIC) of 4 μg/mL against Candida rugosa. Pradimicin A exhibits antiviral activity against SARS-CoV, human immunodeficiency virus (HIV) and other enveloped viruses. Pradimicin A exerts its fungicidal activity through a Ca2+-dependent mechanism, which induces fungal lysis. Pradimicin A can be used in research related to fungal infections, HIV infections and COVID-19.
For research use only. We do not sell to patients.
- CAS No.: 117704-65-1
- Formula: C40H44N2O18
- Molecular Weight:840.78
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Storage:
Please store the product under the recommended conditions in the Certificate of Analysis.
Biological Activity
|
HIV |
|
Cell Line
|
Type | Value | Description | References |
|---|---|---|---|---|
| C8166 | CC50 |
>50 μM
Compound: PRM-A
|
Cytotoxicity against human C8166 cells after 3 to 4 days
Cytotoxicity against human C8166 cells after 3 to 4 days
|
[PMID: 20047920] |
| C8166 | EC50 |
2.6 μM
Compound: PRM-A
|
Antiviral activity against HIV-1 3B infected in human C8166 cells assessed as inhibition of virus-induced cytopathicity after 3 to 4 days by microscopic analysis
Antiviral activity against HIV-1 3B infected in human C8166 cells assessed as inhibition of virus-induced cytopathicity after 3 to 4 days by microscopic analysis
|
[PMID: 20047920] |
| Caco-2 | CC50 |
>50 μM
Compound: PRM-A
|
Cytotoxicity against human Caco2 cells after 3 to 4 days
Cytotoxicity against human Caco2 cells after 3 to 4 days
|
[PMID: 20047920] |
| CCRF-CEM | CC50 |
>100 μM
Compound: Pradimicin A
|
Cytotoxicity against human CEM cells assessed as cell count after 3 days
Cytotoxicity against human CEM cells assessed as cell count after 3 days
|
[PMID: 26513643] |
| CCRF-CEM | CC50 |
>100 μM
Compound: PRM-A
|
Cytotoxicity against human CEM cells after 7 days by trypan blue staining
Cytotoxicity against human CEM cells after 7 days by trypan blue staining
|
[PMID: 20047920] |
| CCRF-CEM | CC50 |
>100 μM
Compound: Pradimicin
|
Cytotoxicity against human CEM cells assessed as inhibition of cell proliferation
Cytotoxicity against human CEM cells assessed as inhibition of cell proliferation
|
[PMID: 25617695] |
| CCRF-CEM | CC50 |
>50 μM
Compound: PRM-A
|
Cytotoxicity against human CD4+ T-lymphocyte CEM cells
Cytotoxicity against human CD4+ T-lymphocyte CEM cells
|
[PMID: 26540494] |
| CCRF-CEM | EC50 |
>50 μM
Compound: PRM-A
|
Antiviral activity against HIV-1 3B harboring wild type gp120 infected in human CEM cells assessed as inhibition of virus-induced cytopathicity after 3 to 4 days by microscopic analysis
Antiviral activity against HIV-1 3B harboring wild type gp120 infected in human CEM cells assessed as inhibition of virus-induced cytopathicity after 3 to 4 days by microscopic analysis
|
[PMID: 20047920] |
| CCRF-CEM | EC50 |
>50 μM
Compound: PRM-A
|
Cytotoxicity against human CEM cells after 4 days by by Coulter counter analysis
Cytotoxicity against human CEM cells after 4 days by by Coulter counter analysis
|
[PMID: 21749165] |
| CCRF-CEM | EC50 |
3.3 μM
Compound: Pradimicin
|
Antiviral activity against HIV1 3B infected in human CEM cells assessed as reduction in virus-induced cytopathicity after 4 to 5 days by microscopy based syncytium cell formation assay
Antiviral activity against HIV1 3B infected in human CEM cells assessed as reduction in virus-induced cytopathicity after 4 to 5 days by microscopy based syncytium cell formation assay
|
[PMID: 25617695] |
| CCRF-CEM | EC50 |
3.3 μM
Compound: Pradimicin A
|
Antiviral activity against HIV1 3B infected in human CEM cells assessed as inhibition of virus-induced giant cell formation after 4 to 5 days by microscopic analysis
Antiviral activity against HIV1 3B infected in human CEM cells assessed as inhibition of virus-induced giant cell formation after 4 to 5 days by microscopic analysis
|
[PMID: 26513643] |
| CCRF-CEM | EC50 |
3.4 μM
Compound: PRM-A
|
Antiviral activity against HIV1 3B infected in human CD4+ T-lymphocyte CEM cells assessed as inhibition of virus-induced cytopathicity after 4 to 5 days by microscopic analysis
Antiviral activity against HIV1 3B infected in human CD4+ T-lymphocyte CEM cells assessed as inhibition of virus-induced cytopathicity after 4 to 5 days by microscopic analysis
|
[PMID: 26540494] |
| CCRF-CEM | EC50 |
4.3 μM
Compound: PRM-A
|
Antiviral activity against SIV mac251 infected in human HUT78 cells assessed as prevention of syncytium formation between persistently SIV mac251-infected HUT-78 cells and uninfected CEM cells after 3 to 4 days by ELISA
Antiviral activity against SIV mac251 infected in human HUT78 cells assessed as prevention of syncytium formation between persistently SIV mac251-infected HUT-78 cells and uninfected CEM cells after 3 to 4 days by ELISA
|
[PMID: 20047920] |
| CCRF-CEM | EC50 |
5.2 μM
Compound: PRM-A
|
Antiviral activity against compound pretreated HIV-1 3B isolate 42 harboring gp120 mutant infected in human CEM cells assessed as inhibition of virus-induced cytopathicity after 3 to 4 days by microscopic analysis
Antiviral activity against compound pretreated HIV-1 3B isolate 42 harboring gp120 mutant infected in human CEM cells assessed as inhibition of virus-induced cytopathicity after 3 to 4 days by microscopic analysis
|
[PMID: 20047920] |
| CCRF-CEM | EC50 |
5.2 μM
Compound: PRM-A
|
Antiviral activity against HIV-2 ROD infected in human CEM cells assessed as inhibition of virus-induced cytopathicity after 3 to 4 days by microscopic analysis
Antiviral activity against HIV-2 ROD infected in human CEM cells assessed as inhibition of virus-induced cytopathicity after 3 to 4 days by microscopic analysis
|
[PMID: 20047920] |
| CCRF-CEM | EC50 |
5.2 μM
Compound: PRM-A
|
Antiviral activity against HIV1 3B infected in human CEM cells assessed as inhibition of virus-induced cytopathicity after 4 days
Antiviral activity against HIV1 3B infected in human CEM cells assessed as inhibition of virus-induced cytopathicity after 4 days
|
[PMID: 21749165] |
| CCRF-CEM | EC50 |
5.9 μM
Compound: Pradimicin
|
Antiviral activity against HIV2 ROD infected in human CEM cells assessed as reduction in virus-induced cytopathicity after 4 to 5 days by microscopy based syncytium cell formation assay
Antiviral activity against HIV2 ROD infected in human CEM cells assessed as reduction in virus-induced cytopathicity after 4 to 5 days by microscopy based syncytium cell formation assay
|
[PMID: 25617695] |
| CCRF-CEM | EC50 |
5.9 μM
Compound: Pradimicin A
|
Antiviral activity against HIV2 ROD infected in human CEM cells assessed as inhibition of virus-induced giant cell formation after 4 to 5 days by microscopic analysis
Antiviral activity against HIV2 ROD infected in human CEM cells assessed as inhibition of virus-induced giant cell formation after 4 to 5 days by microscopic analysis
|
[PMID: 26513643] |
| CCRF-CEM | EC50 |
5.9 μM
Compound: PRM-A
|
Antiviral activity against HIV-1 3B infected in human CEM cells assessed as inhibition of virus-induced cytopathicity after 3 to 4 days by microscopic analysis
Antiviral activity against HIV-1 3B infected in human CEM cells assessed as inhibition of virus-induced cytopathicity after 3 to 4 days by microscopic analysis
|
[PMID: 20047920] |
| CCRF-CEM | EC50 |
5.9 μM
Compound: PRM-A
|
Antiviral activity against HIV2 ROD infected in human CEM cells assessed as inhibition of virus-induced cytopathicity after 4 days
Antiviral activity against HIV2 ROD infected in human CEM cells assessed as inhibition of virus-induced cytopathicity after 4 days
|
[PMID: 21749165] |
| HeLa | CC50 |
>50 μM
Compound: PRM-A
|
Cytotoxicity against human HeLa cells after 3 to 4 days
Cytotoxicity against human HeLa cells after 3 to 4 days
|
[PMID: 20047920] |
| L1210 | CC50 |
>50 μM
Compound: PRM-A
|
Cytotoxicity against mouse L1210 cells after 3 to 4 days
Cytotoxicity against mouse L1210 cells after 3 to 4 days
|
[PMID: 20047920] |
| MOLT-4 | CC50 |
>50 μM
Compound: PRM-A
|
Cytotoxicity against human Molt4 cells after 3 to 4 days
Cytotoxicity against human Molt4 cells after 3 to 4 days
|
[PMID: 20047920] |
| MT4 | CC50 |
>100 μM
Compound: PRM-A
|
Cytotoxicity against human MT4 cells assessed as reduction in cell viability measured after 5 days by MTS/PES assay
Cytotoxicity against human MT4 cells assessed as reduction in cell viability measured after 5 days by MTS/PES assay
|
[PMID: 31809045] |
| MT4 | CC50 |
>100 μM
Compound: PRM-A
|
Cytotoxicity against human MT4 cells assessed as reduction in cell viability measured after 5 days by MTS/PES assay
Cytotoxicity against human MT4 cells assessed as reduction in cell viability measured after 5 days by MTS/PES assay
|
[PMID: 34229438] |
| MT4 | CC50 |
>100 μM
Compound: PRM-A
|
Cytotoxicity against human MT4 cells assessed as cell viability measured after 5 days by MTS assay
Cytotoxicity against human MT4 cells assessed as cell viability measured after 5 days by MTS assay
|
[PMID: 35512567] |
| MT4 | CC50 |
>50 μM
Compound: PRM-A
|
Cytotoxicity against human MT4 cells after 7 days by trypan blue staining
Cytotoxicity against human MT4 cells after 7 days by trypan blue staining
|
[PMID: 20047920] |
| MT4 | EC50 |
5 μM
Compound: PRM-A
|
Antiviral activity against HIV-2 ROD infected in human MT4 cells assessed as inhibition of virus-induced cytopathicity after 7 days by trypan blue staining
Antiviral activity against HIV-2 ROD infected in human MT4 cells assessed as inhibition of virus-induced cytopathicity after 7 days by trypan blue staining
|
[PMID: 20047920] |
| MT4 | EC50 |
5.2 μM
Compound: PRM-A
|
Antiviral activity against HIV-1 3B infected in human MT4 cells assessed as inhibition of virus-induced cytopathicity after 7 days by trypan blue staining
Antiviral activity against HIV-1 3B infected in human MT4 cells assessed as inhibition of virus-induced cytopathicity after 7 days by trypan blue staining
|
[PMID: 20047920] |
| MT4 | EC50 |
5.5 μM
Compound: PRM-A
|
Antiviral activity against SIV mac251 infected in human MT4 cells assessed as inhibition of virus-induced cytopathicity after 7 days by trypan blue staining
Antiviral activity against SIV mac251 infected in human MT4 cells assessed as inhibition of virus-induced cytopathicity after 7 days by trypan blue staining
|
[PMID: 20047920] |
| OST | CC50 |
>50 μM
Compound: PRM-A
|
Cytotoxicity against human thymidine kinase-negative OST cells after 3 to 4 days
Cytotoxicity against human thymidine kinase-negative OST cells after 3 to 4 days
|
[PMID: 20047920] |
| PBMC | CC50 |
>250 μM
Compound: PRM-A
|
Cytotoxicity against human PBMC after 7 days by trypan blue staining
Cytotoxicity against human PBMC after 7 days by trypan blue staining
|
[PMID: 20047920] |
| PBMC | CC50 |
>50 μM
Compound: PRM-A
|
Cytotoxicity against human PBMC cells after 3 to 4 days
Cytotoxicity against human PBMC cells after 3 to 4 days
|
[PMID: 20047920] |
| PBMC | EC50 |
>50 μM
Compound: PRM-A
|
Antiviral activity against HIV-1 3B cells infected in human PBMC cells assessed as inhibition of virus-induced cytopathicity after 3 to 4 days by microscopic analysis
Antiviral activity against HIV-1 3B cells infected in human PBMC cells assessed as inhibition of virus-induced cytopathicity after 3 to 4 days by microscopic analysis
|
[PMID: 20047920] |
| Raji | EC50 |
3.4 μM
Compound: PRM-A
|
Antiviral activity against compound pretreated X4 tropic HIV-1 3B infected in human Raji cells expressing DC-SIGN gene assessed as prevention of syncytium formation between persistently HIV-1 3B-infected Raji cells and uninfected human C8166 cells after 4
Antiviral activity against compound pretreated X4 tropic HIV-1 3B infected in human Raji cells expressing DC-SIGN gene assessed as prevention of syncytium formation between persistently HIV-1 3B-infected Raji cells and uninfected human C8166 cells after 4
|
[PMID: 20047920] |
| Raji | EC50 |
5.4 μM
Compound: PRM-A
|
Antiviral activity against X4 tropic HIV-1 3B infected in human Raji cells expressing DC-SIGN gene assessed as prevention of syncytium formation between persistently HIV-1 3B-infected Raji cells and uninfected human C8166 cells after 36 to 42 hrs by micro
Antiviral activity against X4 tropic HIV-1 3B infected in human Raji cells expressing DC-SIGN gene assessed as prevention of syncytium formation between persistently HIV-1 3B-infected Raji cells and uninfected human C8166 cells after 36 to 42 hrs by micro
|
[PMID: 20047920] |
| Raji | IC50 |
16 μM
Compound: PRM-A
|
Antiviral activity against SIV mac251 infected in human Raji cells expressing DC-SIGN gene assessed as inhibition of virus capture by Raji cells after 60 mins by ELISA
Antiviral activity against SIV mac251 infected in human Raji cells expressing DC-SIGN gene assessed as inhibition of virus capture by Raji cells after 60 mins by ELISA
|
[PMID: 20047920] |
| Raji | IC50 |
16 μM
Compound: PRM-A
|
Antiviral activity against SIV mac251 infected in human Raji cells expressing DC-SIGN gene assessed as prevention of syncytium formation between persistently HIV-1 3B-infected Raji cells and uninfected human C8166 cells after 60 mins by ELISA
Antiviral activity against SIV mac251 infected in human Raji cells expressing DC-SIGN gene assessed as prevention of syncytium formation between persistently HIV-1 3B-infected Raji cells and uninfected human C8166 cells after 60 mins by ELISA
|
[PMID: 20047920] |
| Raji | IC50 |
21 μM
Compound: PRM-A
|
Antiviral activity against R5 tropic HIV-1 Bal infected in human Raji cells expressing DC-SIGN gene assessed as inhibition of virus capture by Raji cells after 60 mins by ELISA
Antiviral activity against R5 tropic HIV-1 Bal infected in human Raji cells expressing DC-SIGN gene assessed as inhibition of virus capture by Raji cells after 60 mins by ELISA
|
[PMID: 20047920] |
| Raji | IC50 |
3.5 μM
Compound: PRM-A
|
Antiviral activity against X4 tropic HIV-1 3B infected in human Raji cells expressing DC-SIGN gene assessed as inhibition of virus capture by Raji cells after 60 mins by ELISA
Antiviral activity against X4 tropic HIV-1 3B infected in human Raji cells expressing DC-SIGN gene assessed as inhibition of virus capture by Raji cells after 60 mins by ELISA
|
[PMID: 20047920] |
| SUP-T1 | EC50 |
3.4 μM
Compound: PRM-A
|
Antiviral activity against HIV-1 3B infected in human HUT78 cells assessed as prevention of syncytium formation between persistently HIV-1 3B-infected HUT-78 cells and uninfected SupT1 cells after 3 to 4 days by ELISA
Antiviral activity against HIV-1 3B infected in human HUT78 cells assessed as prevention of syncytium formation between persistently HIV-1 3B-infected HUT-78 cells and uninfected SupT1 cells after 3 to 4 days by ELISA
|
[PMID: 20047920] |
| U-87MG ATCC | CC50 |
>50 μM
Compound: PRM-A
|
Cytotoxicity against human U87 cells after 3 to 4 days
Cytotoxicity against human U87 cells after 3 to 4 days
|
[PMID: 20047920] |
Pradimicin A (48 h) inhibits the growth of Candida rugosa with a minimum inhibitory concentration (MIC) of 4 μg/mL, and completely inhibits Candida rugosa growth while showing preferential binding to branched oligomannose motifs 6 and 7 (MAC = 1 mM) relative to other tested glycan structures[1][3].
Pradimicin A (0.3-100 μM; 1 h pre-incubation, 3 days post challenge) inhibits SARS-CoV-2 infection of Calu-3 cells with an IC50 of 1.2 μM, shows no cytotoxicity at concentrations up to 100 μM, and its antiviral activity is dependent on binding to branched oligomannose motifs on viral spike proteins[1].
Pradimicin A (1 mM) shows Ca2+‑dependent specific binding to Man-OMe (100 mM) with two distinct binding sites in ITC assays (40 injections, 30 °C). The primary binding (Ka = 10400 M⁻¹) is approximately 40‑fold stronger than the secondary binding (Ka = 263 M⁻¹)[2].
Pradimicin A (1 mM) binds methyl α-D-mannopyranoside in a cell-free buffer system with a primary dissociation constant (Kd1) of 96 μM and a secondary dissociation constant (Kd2) of 3800 μM[3].
Pradimicin A (0.8-12.5 μg/mL) exhibits broad-spectrum antifungal activity against diverse fungal species including Candida albicans A9540[5].
Pradimicin A exhibits antiviral activity against coronaviruses and HIV-1, targeting viral glycoprotein mannose moieties and demonstrating a high genetic barrier to HIV-1 resistance[5].
MedChemExpress (MCE) has not independently confirmed the accuracy of these methods. They are for reference only.
Chemical Information
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CAS No. 117704-65-1
-
Molecular Weight 840.78
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Formula C40H44N2O18
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SMILES
OC1=C2C3=C(O)C(C(N[C@H](C)C(O)=O)=O)=C(C)C=C3[C@@H]([C@H](C2=CC4=C1C(C5=CC(OC)=CC(O)=C5C4=O)=O)O)O[C@H]6[C@@H]([C@H]([C@H]([C@H](O6)C)NC)O[C@H]7[C@@H]([C@H]([C@@H](CO7)O)O)O)O
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Shipping
Room temperature in continental US; may vary elsewhere.
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Storage
Please store the product under the recommended conditions in the Certificate of Analysis.
Purity & Documentation
References
[1]. Nakagawa Y, et al. Molecular basis of N-glycan recognition by pradimicin a and its potential as a SARS-CoV-2 entry inhibitor. Bioorg Med Chem. 2024 May 1;105:117732. [Content Brief]
[2]. Nakagawa Y, et al. Mapping of the primary mannose binding site of pradimicin A. J Am Chem Soc. 2011;133(43):17485-17493. [Content Brief]
[3]. Miyanishi W, et al. d-Mannose binding, aggregation property, and antifungal activity of amide derivatives of pradimicin A. Bioorg Med Chem. 2022;55:116590. [Content Brief]
[4]. Nakagawa Y, et al. Molecular Basis of Mannose Recognition by Pradimicins and their Application to Microbial Cell Surface Imaging. Cell Chem Biol. 2019;26(7):950-959.e8. [Content Brief]
[5]. Guo Y, et al. Isolation, biosynthesis, and biological activity of pradimicins from actinomycetes. Bioorg Chem. 2025;164:108884. [Content Brief]
Calculators
Concentration (start) × Volume (start) = Concentration (final) × Volume (final)