TSEN54 - tRNA splicing endonuclease subunit 54 Gene

Also Known as PCH4; PCH5; PCH2A; sen54; SEN54L

Species: Homo sapiens

Gene Type: protein coding
Gene ID: 283989

About TSEN54

Cytogenetic location: 17q25.1 Genomic coordinates (GRCh38): 17:75,516,528-75,524,735 (from NCBI)

This gene has 20 transcripts (splice variants), 204 orthologues and is associated with 6 phenotypes. Ubiquitous expression in spleen (RPKM 8.3), duodenum (RPKM 7.0) and 25 other tissues.

Summary

This gene encodes a subunit of the tRNA splicing Endonuclease complex, which catalyzes the removal of introns from precursor tRNAs. The complex is also implicated in pre-mRNA 3-prime end processing. Mutations in this gene result in pontocerebellar hypoplasia type 2.[provided by RefSeq, Oct 2009]

TSEN54 Products (1)

mRNA Protein Name
NM_207346.3 NP_997229.2 tRNA-splicing endonuclease subunit Sen54
Molecular Function GO Annotation Evidence References Source
enables protein binding IPI
IPI: Inferred from physical interaction
25416956 GOA
Biological Process GO Annotation Evidence References Source
involved in tRNA splicing, via endonucleolytic cleavage and ligation IDA
IDA: Inferred from direct assay
17495927 GOA
EXP: Inferred from Experiment IDA: Inferred from direct assay IPI: Inferred from physical interaction IMP: Inferred from mutant phenotype IGI: Inferred from genetic interaction IEP: Inferred from expression pattern

TSEN54 Protein Structure

tRNA_int_end_N2

tRNA_int_end_N2: tRNA-splicing endonuclease subunit sen54 N-term (63 - 130)

  • 0
  • 100
  • 200
  • 300
  • 400
  • 500
  • 526 a.a.
Protein Preferred Names Protein Names

tRNA-splicing endonuclease subunit Sen54

  • SEN54 homolog

TSEN54 Protein-protein interaction Information

Type
Protein Name Protein ID Interactor Interactor Species Interactor ID Detection Method References
Intra
TSEN54 Q7Z6J9 NFKBID Homo sapiens Q8NI38 32296183
Intra
TSEN54 Q7Z6J9 NFKBID Homo sapiens Q8NI38 32296183
Intra
TSEN54 Q7Z6J9 NFKBID Homo sapiens Q8NI38 32296183
Intra
TSEN54 Q7Z6J9 CCDC57 Homo sapiens Q2TAC2-2 32296183
Intra
TSEN54 Q7Z6J9 CCDC57 Homo sapiens Q2TAC2-2 32296183
Intra
TSEN54 Q7Z6J9 NCKIPSD Homo sapiens Q9NZQ3-3 32296183
Intra
TSEN54 Q7Z6J9 NCKIPSD Homo sapiens Q9NZQ3-3 32296183
Intra
TSEN54 Q7Z6J9 NCKIPSD Homo sapiens Q9NZQ3-3 32296183
Intra
TSEN54 Q7Z6J9 TRIML2 Homo sapiens Q8N7C3 32296183
Intra
TSEN54 Q7Z6J9 TRIML2 Homo sapiens Q8N7C3 32296183
Intra
TSEN54 Q7Z6J9 TRIML2 Homo sapiens Q8N7C3 32296183
Intra
TSEN54 Q7Z6J9 LMO2 Homo sapiens P25791-3 32296183
Intra
TSEN54 Q7Z6J9 LMO2 Homo sapiens P25791-3 32296183
Intra
TSEN54 Q7Z6J9 ZMYND12 Homo sapiens Q9H0C1 32296183
Intra
TSEN54 Q7Z6J9 ZMYND12 Homo sapiens Q9H0C1 32296183
Intra
TSEN54 Q7Z6J9 ZMYND12 Homo sapiens Q9H0C1 32296183
Intra
TSEN54 Q7Z6J9 LHX3 Homo sapiens Q9UBR4-2 32296183
Intra
TSEN54 Q7Z6J9 LHX3 Homo sapiens Q9UBR4-2 32296183
Intra
TSEN54 Q7Z6J9 LHX3 Homo sapiens Q9UBR4-2 32296183
Intra
TSEN54 Q7Z6J9 TSEN2 Homo sapiens Q8NCE0 32296183
Intra
TSEN54 Q7Z6J9 TSEN2 Homo sapiens Q8NCE0 32296183
Intra
TSEN54 Q7Z6J9 TSEN2 Homo sapiens Q8NCE0 25416956
Intra
TSEN54 Q7Z6J9 TSEN2 Homo sapiens Q8NCE0 32296183
Intra
TSEN54 Q7Z6J9 CLP1 Homo sapiens Q92989 32296183
Intra
TSEN54 Q7Z6J9 LHX4 Homo sapiens Q969G2 32296183
Intra
TSEN54 Q7Z6J9 LHX4 Homo sapiens Q969G2 32296183
Intra
TSEN54 Q7Z6J9 LHX4 Homo sapiens Q969G2 32296183
Intra
TSEN54 Q7Z6J9 KPNA5 Homo sapiens O15131 32296183
Intra
TSEN54 Q7Z6J9 KPNA5 Homo sapiens O15131 32296183
Intra
TSEN54 Q7Z6J9 GOLGA6L9 Homo sapiens A6NEM1 32296183
Intra
TSEN54 Q7Z6J9 GOLGA6L9 Homo sapiens A6NEM1 32296183
Intra
TSEN54 Q7Z6J9 MRPL38 Homo sapiens Q96DV4 32296183
Intra
TSEN54 Q7Z6J9 MRPL38 Homo sapiens Q96DV4 32296183
Intra
TSEN54 Q7Z6J9 MRPL38 Homo sapiens Q96DV4 32296183
Intra
TSEN54 Q7Z6J9 RINT1 Homo sapiens Q6NUQ1 32296183
Intra
TSEN54 Q7Z6J9 RINT1 Homo sapiens Q6NUQ1 32296183
Intra
TSEN54 Q7Z6J9 TRIM23 Homo sapiens P36406 32296183
Intra
TSEN54 Q7Z6J9 TRIM23 Homo sapiens P36406 32296183
Intra
TSEN54 Q7Z6J9 NAA10 Homo sapiens P41227 32296183
Intra
TSEN54 Q7Z6J9 NAA10 Homo sapiens P41227 32296183
Intra
TSEN54 Q7Z6J9 IRF4 Homo sapiens Q15306 32296183
Intra
TSEN54 Q7Z6J9 IRF4 Homo sapiens Q15306 32296183
Intra
TSEN54 Q7Z6J9 KRT31 Homo sapiens Q15323 32296183
Intra
TSEN54 Q7Z6J9 KRT31 Homo sapiens Q15323 32296183
Cross: Cross-species interaction Intra: Intraspecies interaction

Related Diseases

Diseases Alias
Pontocerebellar Hypoplasia, Type 4
  • Pontocerebellar Hypoplasia Type 4

  • PCH4

  • Olivopontocerebellar Hypoplasia

  • Encephalopathy Fatal Infantile With Olivopontocerebellar Hypoplasia

  • Encephalopathy, Fatal Infantile, With Olivopontocerebellar Hypoplasia

  • Fatal Infantile Encephalopathy With Olivopontocerebellar Hypoplasia

  • Pontocerebellar Hypoplasia 4

  • Young Mckeever Squier Syndrome

  • Hypoplasia, Pontocerebellar, Type 4

Pontocerebellar Hypoplasia, Type 2a
  • Pontocerebellar Hypoplasia Type 2a

  • PCH2A

  • Pch2

  • Pontocerebellar Hypoplasia With Progressive Cerebral Atrophy

  • Volendam Neurodegenerative Disease

  • Pontocerebellar Hypoplasia 2a

  • Hypoplasia, Pontocerebellar, Type 2a

Pontocerebellar Hypoplasia, Type 5
  • Pontocerebellar Hypoplasia Type 5

  • Olivopontocerebellar Hypoplasia, Fetal-Onset

  • PCH5

  • Olivopontocerebellar Hypoplasia Fetal-Onset

  • Pontocerebellar Hypoplasia 5

  • Hypoplasia, Pontocerebellar, Type 5

Pontocerebellar Hypoplasia
  • Pch

  • Congenital Pontocerebellar Hypoplasia

  • Opch

  • Hypoplasia, Pontocerebellar

  • Pontoneocerebellar Hypoplasia

  • Nonsyndromic Pontocerebellar Hypoplasia

Hypertonia
Non-Syndromic Pontocerebellar Hypoplasia
  • Pontoneocerebellar Hypoplasia

  • Pch

  • Pontoneocerebellar Atrophy

Amblyopia
  • Lazy Eye

Pontocerebellar Hypoplasia, Type 2e
  • Pontocerebellar Hypoplasia Type 2

  • Pontocerebellar Hypoplasia Type 2e

  • Pch2

  • PCH2E

  • Progressive Microcephaly From Birth Extrapyramidal Dyskinesia Chorea Epilepsy

  • Pontocerebellar Hypoplasia 2e

  • Pcca2

  • Progressive Cerebello-Cerebral Atrophy Type 2

  • Doid:0112328

  • Hypoplasia, Pontocerebellar, Type 2e

  • Pontocerebellar Hypoplasia, Type 2d

  • Pontocerebellar Hypoplasia Type 2a

Cerebellar Hypoplasia/Atrophy, Epilepsy, And Global Developmental Delay
  • CHEGDD

Congenital Nervous System Abnormality
  • Congenital Neurologic Anomaly

  • Congenital Nervous System Disorder

Microcephaly
  • Microencephaly

  • Microcephalus

  • Microcephalic

  • Nanocephaly

  • Congenital Microcephaly

  • Brain Hypoplasia

  • Brain Nondevelopment

  • Cephalic Hypoplasia

  • Undeveloped Cerebrum

  • Undeveloped Brain

  • Micrencephalon

  • Micrencephaly

Nervous System Disease
  • Abnormality Of The Nervous System

  • Nervous System Diseases

  • Nervous System Disorder

Pontocerebellar Hypoplasia, Type 12
  • PCH12

  • Pontocerebellar Hypoplasia Type 12

  • Coasy-Related Pontocerebellar Hypoplasia

  • Pontocerebellar Hypoplasia 12

  • Doid:0112327

  • Hypoplasia, Pontocerebellar, Type 12

Pontocerebellar Hypoplasia, Type 6
  • Pontocerebellar Hypoplasia Type 6

  • PCH6

  • Fatal Infantile Encephalopathy With Mitochondrial Respiratory Chain Defects

  • Encephalopathy, Fatal Infantile, With Mitochondrial Respiratory Chain Defects

  • Encephalopathy Fatal Infantile With Mitochondrial Respiratory Chain Defects

  • Pontocerebellar Hypoplasia 6

  • Hypoplasia, Pontocerebellar, Type 6

Pontocerebellar Hypoplasia, Type 15
  • PCH15

  • Pontocerebellar Hypoplasia Type 15

  • Pontocerebellar Hypoplasia 15

  • Doid:0112326

Pontocerebellar Hypoplasia, Type 2f
  • PCH2F

  • Pontocerebellar Hypoplasia Type 2f

  • Pontocerebellar Hypoplasia 2f

  • Doid:0112329

  • Hypoplasia, Pontocerebellar, Type 2f

Pontocerebellar Hypoplasia, Type 1d
  • PCH1D

  • Pontocerebellar Hypoplasia Type 1d

  • Pontocerebellar Hypoplasia 1d

  • Doid:0112323

  • Hypoplasia, Pontocerebellar, Type 1d

Pontocerebellar Hypoplasia, Type 1e
  • Pontocerebellar Hypoplasia Type 1

  • PCH1E

  • Norman Disease

  • Pch1

  • Pontocerebellar Hypoplasia With Anterior Horn Cell Disease

  • Pontocerebellar Hypoplasia With Infantile Spinal Muscular Atrophy

  • Pontocerebellar Hypoplasia Type 1e

  • Pontocerebellar Hypoplasia 1e

  • Doid:0112322

  • Doid:0112330

Pontocerebellar Hypoplasia, Type 2d
  • Pontocerebellar Hypoplasia Type 2d

  • Pcca

  • PCH2D

  • Progressive Cerebello-Cerebral Atrophy

  • Cerebellocerebral Atrophy, Progressive

  • Pontocerebellar Hypoplasia 2d

  • Progressive Cerebellocerebral Atrophy

  • Hypoplasia, Pontocerebellar, Type 2d

Syndromic X-Linked Intellectual Disability Najm Type
  • Mental Retardation And Microcephaly With Pontine And Cerebellar Hypoplasia

  • Micpch

  • X-Linked Intellectual Disability-Microcephaly-Pontocerebellar Hypoplasia Syndrome

Pontocerebellar Hypoplasia, Type 11
  • PCH11

  • Pontocerebellar Hypoplasia Type 11

  • Pontocerebellar Hypoplasia Due To Tbc1d23

  • Pontocerebellar Hypoplasia 11

  • Doid:0112324

Pontocerebellar Hypoplasia, Type 16
  • PCH16

  • Pontocerebellar Hypoplasia Type 16

  • Pontocerebellar Hypoplasia 16

  • Doid:0112333

Pontocerebellar Hypoplasia, Type 1c
  • PCH1C

  • Hypomyelination With Spinal Muscular Atrophy And Cerebellar Hypoplasia

  • Pontocerebellar Hypoplasia Type 1c

  • Pontocerebellar Hypoplasia 1c

  • Doid:0112334

  • Hypoplasia, Pontocerebellar, Type 1c

Anterior Horn Cell Disease
Phosphoserine Aminotransferase Deficiency
  • Psat Deficiency

  • PSATD

  • Phosphoserine Aminotransferase Deficiency, Infantile/Juvenile Form

  • Psat Deficiency, Infantile/Juvenile Form

  • Deficiency, Phosphoserine Aminotransferase

Peho Syndrome
  • Progressive Encephalopathy With Edema, Hypsarrhythmia, And Optic Atrophy

  • Infantile Cerebellooptic Atrophy

  • PEHO

  • Progressive Encephalopathy With Edema, Hypsarrhythmia And Optic Atrophy

  • Progressive Encephalopathy-Optic Atrophy Syndrome

Polyhydramnios
Joubert Syndrome 1
  • Joubert Syndrome

  • Jbts

  • Cerebellooculorenal Syndrome 1

  • JBTS1

  • Joubert-Boltshauser Syndrome

  • Cerebelloparenchymal Disorder Iv

  • Cpd4

  • Cors1

  • Joubert Syndrome And Related Disorders

  • Jsrd

  • Familial Aplasia Of The Vermis

  • Joubert Syndrome Related Disorders

  • Js

  • Cerebellar Vermis Agenesis

  • Cerebelloparenchymal Disorder 4

  • Agenesis Of Cerebellar Vermis

  • Cerebello-Oculo-Renal Syndrome

  • Cors

  • Joubert-Bolthauser Syndrome

  • Cpd Iv

  • Classic Joubert Syndrome

  • Joubert Syndrome Type A

  • Pure Joubert Syndrome

  • Cerebello-Oculo-Renal Syndrome 1

  • Joubert Syndrome-1

  • Joubert Syndrome, Type 1

  • Joubert'S Syndrome

3-Methylglutaconic Aciduria, Type Iii
  • Optic Atrophy

  • 3-Methylglutaconic Aciduria Type 3

  • Costeff Syndrome

  • Mga3

  • Costeff Optic Atrophy Syndrome

  • Optic Atrophy Plus Syndrome

  • Infantile Optic Atrophy With Chorea And Spastic Paraplegia

  • 3-Methylglutaconic Aciduria Type Iii

  • Autosomal Recessive Optic Atrophy Plus Syndrome

  • Autosomal Recessive Optic Atrophy Type 3

  • Opa3 Defect

  • MGCA3

  • Mga, Type Iii

  • Iraqi Jewish Optic Atrophy Plus

  • Mga Type Iii

  • Optic Atrophy, Infantile, With Chorea And Spastic Paraplegia

  • Iraqi-Jewish 'Optic Atrophy Plus'

  • Optic Atrophy 3, Autosomal Recessive

  • Opa3, Autosomal Recessive

  • Opa3-Related 3-Methylglutaconic Aciduria

  • Iraqi-Jewish Optic Atrophy Plus

  • Atrophy Of Optic Disc

  • 3-Alpha Methylglutaconic Aciduria Type Iii

  • Optic Atrophy 3

  • Optic Atrophy Infantile With Chorea And Spastic Paraplegia

  • Autosomal Recessive Opa3

  • Autosomal Recessive Optic Atrophy 3

  • 3-Methylglutaconic Aciduria 3

  • 3-Alpha-Methylglutaconic Aciduria Type 3

  • Optic Atrophy 3 Autosomal Recessive

  • Atrophy, Optic

  • Atrophy, Optic, Plus Syndrome

  • Optic Nerve Atrophy

  • Primary Optic Atrophy

  • Oa - [Optic Atrophy]

  • Second Cranial Nerve Atrophy

  • Second Cranium Nerve Atrophy

Leukoencephalopathy With Vanishing White Matter
  • Cree Leukoencephalopathy

  • Vanishing White Matter Disease

  • Ovarioleukodystrophy

  • Vanishing White Matter Leukodystrophy

  • Childhood Ataxia With Central Nervous System Hypomyelinization

  • Cach

  • Cach Syndrome

  • Myelinosis Centralis Diffusa

  • VWM

  • Cle

  • Childhood Ataxia With Central Nervous System Hypomyelination

  • Childhood Ataxia With Diffuse Central Nervous System Hypomyelination

  • Cach/Vwm

  • Cach/Vwm Syndrome

  • Childhood Ataxia With Central Nervous System Hypomyelination/Vanishing White Matter

  • Cree Leukoencehalopathy

  • Late Infantile Cach Syndrome

  • Juvenile Or Adult Cach Syndrome

  • Congenital Or Early Infantile Cach Syndrome

  • Leukodystrophy With Vanishing White Matter

Walker-Warburg Syndrome
  • Hard Syndrome

  • Walker-Warburg Congenital Muscular Dystrophy

  • Cerebroocular Dysplasia-Muscular Dystrophy Syndrome

  • Cod-Md Syndrome

  • Chemke Syndrome

  • Hydrocephalus, Agyria And Retinal Dysplasia

  • Cerebroocular Dysgenesis

  • Cerebroocular Dysplasia Muscular Dystrophy Syndrome

  • Hard +/- E Syndrome

  • Pagon Syndrome

  • Warburg Syndrome

  • Hydrocephalus, Agyria, And Retinal Dysplasia

  • Mddga

  • Muscular Dystrophy-Dystroglycanopathy , Type A

  • Muscular Dystrophy-Dystroglycanopathy [With Brain And Eye Anomalies], Type A

  • Hydrocephalus-Agyria-Retinal Dysplasia Syndrome

  • Wws

  • Dystrophy, Muscular, Dystroglycanopathy, Type A

Diseases Alias
Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

Orthologs Information

Species Symbol Source ID
Canis familiaris TSEN54 VGNC VGNC:47897
Mus musculus TSEN54 MGD MGI:1923515
Rattus norvegicus TSEN54 RGD RGD:1597379
Bos taurus TSEN54 VGNC VGNC:36412
Felis catus TSEN54 VGNC VGNC:66611
Macaca mulatta TSEN54 VGNC VGNC:79666
Others TSEN54 NCBI