TSEN54 - tRNA splicing endonuclease subunit 54 Gene
Also Known as PCH4; PCH5; PCH2A; sen54; SEN54L
Species: Homo sapiens
About TSEN54
This gene has 20 transcripts (splice variants), 204 orthologues and is associated with 6 phenotypes. Ubiquitous expression in spleen (RPKM 8.3), duodenum (RPKM 7.0) and 25 other tissues.
Summary
This gene encodes a subunit of the tRNA splicing Endonuclease complex, which catalyzes the removal of introns from precursor tRNAs. The complex is also implicated in pre-mRNA 3-prime end processing. Mutations in this gene result in pontocerebellar hypoplasia type 2.[provided by RefSeq, Oct 2009]
TSEN54 Products (1)
| mRNA | Protein | Name |
|---|---|---|
| NM_207346.3 | NP_997229.2 | tRNA-splicing endonuclease subunit Sen54 |
| Molecular Function GO Annotation | Evidence | References | Source |
|---|---|---|---|
| enables protein binding |
IPI
IPI: Inferred from physical interaction
|
25416956 | GOA |
| Biological Process GO Annotation | Evidence | References | Source |
|---|---|---|---|
| involved in tRNA splicing, via endonucleolytic cleavage and ligation |
IDA
IDA: Inferred from direct assay
|
17495927 | GOA |
TSEN54 Protein Structure
tRNA_int_end_N2: tRNA-splicing endonuclease subunit sen54 N-term (63 - 130)
- 0
- 100
- 200
- 300
- 400
- 500
- 526 a.a.
| Protein Preferred Names | Protein Names | |
|---|---|---|
|
tRNA-splicing endonuclease subunit Sen54 |
|
TSEN54 Protein-protein interaction Information
|
Type
|
Protein Name | Protein ID | Interactor | Interactor Species | Interactor ID | Detection Method | References |
|---|---|---|---|---|---|---|---|
|
Intra
|
TSEN54 | Q7Z6J9 | NFKBID | Homo sapiens | Q8NI38 | 32296183 | |
|
Intra
|
TSEN54 | Q7Z6J9 | NFKBID | Homo sapiens | Q8NI38 | 32296183 | |
|
Intra
|
TSEN54 | Q7Z6J9 | NFKBID | Homo sapiens | Q8NI38 | 32296183 | |
|
Intra
|
TSEN54 | Q7Z6J9 | CCDC57 | Homo sapiens | Q2TAC2-2 | 32296183 | |
|
Intra
|
TSEN54 | Q7Z6J9 | CCDC57 | Homo sapiens | Q2TAC2-2 | 32296183 | |
|
Intra
|
TSEN54 | Q7Z6J9 | NCKIPSD | Homo sapiens | Q9NZQ3-3 | 32296183 | |
|
Intra
|
TSEN54 | Q7Z6J9 | NCKIPSD | Homo sapiens | Q9NZQ3-3 | 32296183 | |
|
Intra
|
TSEN54 | Q7Z6J9 | NCKIPSD | Homo sapiens | Q9NZQ3-3 | 32296183 | |
|
Intra
|
TSEN54 | Q7Z6J9 | TRIML2 | Homo sapiens | Q8N7C3 | 32296183 | |
|
Intra
|
TSEN54 | Q7Z6J9 | TRIML2 | Homo sapiens | Q8N7C3 | 32296183 | |
|
Intra
|
TSEN54 | Q7Z6J9 | TRIML2 | Homo sapiens | Q8N7C3 | 32296183 | |
|
Intra
|
TSEN54 | Q7Z6J9 | LMO2 | Homo sapiens | P25791-3 | 32296183 | |
|
Intra
|
TSEN54 | Q7Z6J9 | LMO2 | Homo sapiens | P25791-3 | 32296183 | |
|
Intra
|
TSEN54 | Q7Z6J9 | ZMYND12 | Homo sapiens | Q9H0C1 | 32296183 | |
|
Intra
|
TSEN54 | Q7Z6J9 | ZMYND12 | Homo sapiens | Q9H0C1 | 32296183 | |
|
Intra
|
TSEN54 | Q7Z6J9 | ZMYND12 | Homo sapiens | Q9H0C1 | 32296183 | |
|
Intra
|
TSEN54 | Q7Z6J9 | LHX3 | Homo sapiens | Q9UBR4-2 | 32296183 | |
|
Intra
|
TSEN54 | Q7Z6J9 | LHX3 | Homo sapiens | Q9UBR4-2 | 32296183 | |
|
Intra
|
TSEN54 | Q7Z6J9 | LHX3 | Homo sapiens | Q9UBR4-2 | 32296183 | |
|
Intra
|
TSEN54 | Q7Z6J9 | TSEN2 | Homo sapiens | Q8NCE0 | 32296183 | |
|
Intra
|
TSEN54 | Q7Z6J9 | TSEN2 | Homo sapiens | Q8NCE0 | 32296183 | |
|
Intra
|
TSEN54 | Q7Z6J9 | TSEN2 | Homo sapiens | Q8NCE0 | 25416956 | |
|
Intra
|
TSEN54 | Q7Z6J9 | TSEN2 | Homo sapiens | Q8NCE0 | 32296183 | |
|
Intra
|
TSEN54 | Q7Z6J9 | CLP1 | Homo sapiens | Q92989 | 32296183 | |
|
Intra
|
TSEN54 | Q7Z6J9 | LHX4 | Homo sapiens | Q969G2 | 32296183 | |
|
Intra
|
TSEN54 | Q7Z6J9 | LHX4 | Homo sapiens | Q969G2 | 32296183 | |
|
Intra
|
TSEN54 | Q7Z6J9 | LHX4 | Homo sapiens | Q969G2 | 32296183 | |
|
Intra
|
TSEN54 | Q7Z6J9 | KPNA5 | Homo sapiens | O15131 | 32296183 | |
|
Intra
|
TSEN54 | Q7Z6J9 | KPNA5 | Homo sapiens | O15131 | 32296183 | |
|
Intra
|
TSEN54 | Q7Z6J9 | GOLGA6L9 | Homo sapiens | A6NEM1 | 32296183 | |
|
Intra
|
TSEN54 | Q7Z6J9 | GOLGA6L9 | Homo sapiens | A6NEM1 | 32296183 | |
|
Intra
|
TSEN54 | Q7Z6J9 | MRPL38 | Homo sapiens | Q96DV4 | 32296183 | |
|
Intra
|
TSEN54 | Q7Z6J9 | MRPL38 | Homo sapiens | Q96DV4 | 32296183 | |
|
Intra
|
TSEN54 | Q7Z6J9 | MRPL38 | Homo sapiens | Q96DV4 | 32296183 | |
|
Intra
|
TSEN54 | Q7Z6J9 | RINT1 | Homo sapiens | Q6NUQ1 | 32296183 | |
|
Intra
|
TSEN54 | Q7Z6J9 | RINT1 | Homo sapiens | Q6NUQ1 | 32296183 | |
|
Intra
|
TSEN54 | Q7Z6J9 | TRIM23 | Homo sapiens | P36406 | 32296183 | |
|
Intra
|
TSEN54 | Q7Z6J9 | TRIM23 | Homo sapiens | P36406 | 32296183 | |
|
Intra
|
TSEN54 | Q7Z6J9 | NAA10 | Homo sapiens | P41227 | 32296183 | |
|
Intra
|
TSEN54 | Q7Z6J9 | NAA10 | Homo sapiens | P41227 | 32296183 | |
|
Intra
|
TSEN54 | Q7Z6J9 | IRF4 | Homo sapiens | Q15306 | 32296183 | |
|
Intra
|
TSEN54 | Q7Z6J9 | IRF4 | Homo sapiens | Q15306 | 32296183 | |
|
Intra
|
TSEN54 | Q7Z6J9 | KRT31 | Homo sapiens | Q15323 | 32296183 | |
|
Intra
|
TSEN54 | Q7Z6J9 | KRT31 | Homo sapiens | Q15323 | 32296183 |
Related Diseases
| Diseases | Alias | |
|---|---|---|
| Pontocerebellar Hypoplasia, Type 4 |
|
|
| Pontocerebellar Hypoplasia, Type 2a |
|
|
| Pontocerebellar Hypoplasia, Type 5 |
|
|
| Pontocerebellar Hypoplasia |
|
|
| Hypertonia |
|
|
| Non-Syndromic Pontocerebellar Hypoplasia |
|
|
| Amblyopia |
|
|
| Pontocerebellar Hypoplasia, Type 2e |
|
|
| Cerebellar Hypoplasia/Atrophy, Epilepsy, And Global Developmental Delay |
|
|
| Congenital Nervous System Abnormality |
|
|
| Microcephaly |
|
|
| Nervous System Disease |
|
|
| Pontocerebellar Hypoplasia, Type 12 |
|
|
| Pontocerebellar Hypoplasia, Type 6 |
|
|
| Pontocerebellar Hypoplasia, Type 15 |
|
|
| Pontocerebellar Hypoplasia, Type 2f |
|
|
| Pontocerebellar Hypoplasia, Type 1d |
|
|
| Pontocerebellar Hypoplasia, Type 1e |
|
|
| Pontocerebellar Hypoplasia, Type 2d |
|
|
| Syndromic X-Linked Intellectual Disability Najm Type |
|
|
| Pontocerebellar Hypoplasia, Type 11 |
|
|
| Pontocerebellar Hypoplasia, Type 16 |
|
|
| Pontocerebellar Hypoplasia, Type 1c |
|
|
| Anterior Horn Cell Disease |
|
|
| Phosphoserine Aminotransferase Deficiency |
|
|
| Peho Syndrome |
|
|
| Polyhydramnios |
|
|
| Joubert Syndrome 1 |
|
|
| 3-Methylglutaconic Aciduria, Type Iii |
|
|
| Leukoencephalopathy With Vanishing White Matter |
|
|
| Walker-Warburg Syndrome |
|
|
Orthologs Information
| Species | Symbol | Source | ID |
|---|---|---|---|
| Canis familiaris | TSEN54 | VGNC | VGNC:47897 |
| Mus musculus | TSEN54 | MGD | MGI:1923515 |
| Rattus norvegicus | TSEN54 | RGD | RGD:1597379 |
| Bos taurus | TSEN54 | VGNC | VGNC:36412 |
| Felis catus | TSEN54 | VGNC | VGNC:66611 |
| Macaca mulatta | TSEN54 | VGNC | VGNC:79666 |
| Others | TSEN54 | NCBI |