CLN3 - CLN3 lysosomal/endosomal transmembrane protein, battenin Gene
Also Known as BTS; BTN1; JNCL
Species: Homo sapiens
About CLN3
This gene has 62 transcripts (splice variants), 193 orthologues and is associated with 5 phenotypes. Ubiquitous expression in placenta (RPKM 23.0), colon (RPKM 17.0) and 25 other tissues.
Summary
This gene encodes a protein that is involved in lysosomal function. Mutations in this, as well as Other neuronal ceroid-lipofuscinosis (CLN) genes, cause neurodegenerative diseases commonly known as Batten disease or collectively known as neuronal ceroid lipofuscinoses (NCLs). Many alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Jul 2008]
CLN3 Products (6)
| mRNA | Protein | Name |
|---|---|---|
| NM_000086.2 | NP_000077.1 | battenin isoform a |
| NM_001042432.2 | NP_001035897.1 | battenin isoform a |
| NM_001286104.2 | NP_001273033.1 | battenin isoform b |
| NM_001286105.2 | NP_001273034.1 | battenin isoform c |
| NM_001286109.2 | NP_001273038.1 | battenin isoform d |
| NM_001286110.2 | NP_001273039.1 | battenin isoform e |
| Molecular Function GO Annotation | Evidence | References | Source |
|---|---|---|---|
| enables glycolipid binding |
IDA
IDA: Inferred from direct assay
|
18317235 | GOA |
| enables protein binding |
IPI
IPI: Inferred from physical interaction
|
12134079 | GOA |
| enables sulfatide binding |
IDA
IDA: Inferred from direct assay
|
18317235 | GOA |
| Cellular Component GO Annotation | Evidence | References | Source |
|---|---|---|---|
| located in Golgi apparatus |
IDA
IDA: Inferred from direct assay
|
10332042 | GOA |
| located in Golgi apparatus |
IMP
IMP: Inferred from mutant phenotype
|
23840424 | GOA |
| located in Golgi membrane |
IDA
IDA: Inferred from direct assay
|
9949212 | GOA |
| located in Golgi stack |
IDA
IDA: Inferred from direct assay
|
15240864 | GOA |
| located in caveola |
IDA
IDA: Inferred from direct assay
|
15240864 | GOA |
| located in caveola |
IMP
IMP: Inferred from mutant phenotype
|
23840424 | GOA |
| located in cytoplasm |
IDA
IDA: Inferred from direct assay
|
10191116 | GOA |
| located in early endosome |
IDA
IDA: Inferred from direct assay
|
15240864 | GOA |
| located in early endosome membrane |
IMP
IMP: Inferred from mutant phenotype
|
23840424 | GOA |
| located in endoplasmic reticulum |
IDA
IDA: Inferred from direct assay
|
10191111 | GOA |
| located in endoplasmic reticulum membrane |
IDA
IDA: Inferred from direct assay
|
12706816 | GOA |
| located in late endosome |
IDA
IDA: Inferred from direct assay
|
10332042 | GOA |
| located in late endosome |
IMP
IMP: Inferred from mutant phenotype
|
23840424 | GOA |
| located in lysosomal membrane |
IDA
IDA: Inferred from direct assay
|
9384607 | GOA |
| located in lysosomal membrane |
IMP
IMP: Inferred from mutant phenotype
|
15598649 | GOA |
| located in lysosome |
IDA
IDA: Inferred from direct assay
|
10332042 | GOA |
| located in lysosome |
IMP
IMP: Inferred from mutant phenotype
|
14644441 | GOA |
| located in membrane |
IDA
IDA: Inferred from direct assay
|
10191112 | GOA |
| located in membrane raft |
IDA
IDA: Inferred from direct assay
|
15240864 | GOA |
| located in membrane raft |
IMP
IMP: Inferred from mutant phenotype
|
23840424 | GOA |
| located in neuron projection |
IDA
IDA: Inferred from direct assay
|
10332042 | GOA |
| located in nucleus |
IDA
IDA: Inferred from direct assay
|
10191116 | GOA |
| located in plasma membrane |
IDA
IDA: Inferred from direct assay
|
10191116 | GOA |
| located in plasma membrane |
IMP
IMP: Inferred from mutant phenotype
|
14644441 | GOA |
| located in recycling endosome |
IDA
IDA: Inferred from direct assay
|
15240864 | GOA |
| located in synaptic vesicle |
IDA
IDA: Inferred from direct assay
|
10332042 | GOA |
| located in trans-Golgi network |
IDA
IDA: Inferred from direct assay
|
10332042 | GOA |
CLN3 Protein Structure
CLN3: CLN3 protein (38 - 438)
- 0
- 100
- 200
- 300
- 400
- 438 a.a.
| Protein Preferred Names | Protein Names | |
|---|---|---|
|
battenin |
|
Related Diseases
| Diseases | Alias | |
|---|---|---|
| Ceroid Lipofuscinosis, Neuronal, 3 |
|
|
| Neuronal Ceroid Lipofuscinosis |
|
|
| Stargardt Disease 1 |
|
|
| Cone-Rod Dystrophy 2 |
|
|
| Fundus Dystrophy |
|
|
| Retinitis Pigmentosa |
|
|
| Neuronal Ceroid-Lipofuscinoses |
|
|
| Peripheral Retinal Degeneration |
|
|
| Ceroid Lipofuscinosis, Neuronal, 2 |
|
|
| Retinal Degeneration |
|
|
| Lysosomal Storage Disease |
|
|
| Phelan-Mcdermid Syndrome |
|
|
| Myoclonic Epilepsy Of Lafora |
|
|
| Ceroid Lipofuscinosis, Neuronal, 13 |
|
|
| Ceroid Lipofuscinosis, Neuronal, 8, Northern Epilepsy Variant |
|
|
| Scheie Syndrome |
|
|
| Ceroid Lipofuscinosis, Neuronal, 11 |
|
|
| Ceroid Lipofuscinosis, Neuronal, 10 |
|
|
| Unverricht-Lundborg Syndrome |
|
|
| Aspartylglucosaminuria |
|
|
| Progressive Myoclonus Epilepsy 3 |
|
|
| Mucopolysaccharidosis, Type Iiia |
|
|
| Lipid Storage Disease |
|
|
| Glycoproteinosis |
|
|
| Gm1 Gangliosidosis |
|
|
| Hermansky-Pudlak Syndrome 6 |
|
|
| Mucopolysaccharidosis Iii |
|
|
| Gangliosidosis |
|
|
| Mucolipidosis |
|
|
| Fucosidosis |
|
|
| Ceroid Lipofuscinosis, Neuronal, 7 |
|
|
| Schwannoma Of Twelfth Cranial Nerve |
|
|
| Hypoglossal Nerve Disease |
|
|
| Mannosidosis, Alpha B, Lysosomal |
|
|
| Gm2 Gangliosidosis |
|
|
| C Syndrome |
|
|
| Progressive Myoclonus Epilepsy |
|
|
| Mucopolysaccharidosis-Plus Syndrome |
|
|
| Mucolipidosis Iv |
|
|
| Spinocerebellar Ataxia, Autosomal Recessive 7 |
|
|
| Glycogen Storage Disease Ii |
|
|
| Sphingolipidosis |
|
|
| Tay-Sachs Disease |
|
|
| Cystinosis |
|
|
| Cenani-Lenz Syndactyly Syndrome |
|
|
| Niemann-Pick Disease, Type C1 |
|
|
| Gaucher'S Disease |
|
|
| Metachromatic Leukodystrophy |
|
|
| Niemann-Pick Disease |
|
|
| Stargardt Disease |
|
|
| Early Myoclonic Encephalopathy |
|
|
| Peroxisome Biogenesis Disorder 1b |
|
|
| Eye Disease |
|
|
| Leber Plus Disease |
|
|
Orthologs Information
| Species | Symbol | Source | ID |
|---|---|---|---|
| Rattus norvegicus | CLN3 | RGD | RGD:1359537 |
| Mus musculus | CLN3 | MGD | MGI:107537 |