COL1A1 - collagen type I alpha 1 chain Gene
Also Known as OI1; OI2; OI3; OI4; EDSC; CAFYD; EDSARTH1
Species: Homo sapiens
About COL1A1
This gene has 13 transcripts (splice variants), 252 orthologues, 37 paralogues and is associated with 114 phenotypes. Biased expression in gall bladder (RPKM 850.7), urinary bladder (RPKM 497.1) and 11 other tissues.
Summary
This gene encodes the pro-alpha1 chains of type I Collagen whose triple helix comprises two alpha1 chains and one alpha2 chain. Type I is a fibril-forming Collagen found in most connective tissues and is abundant in bone, cornea, dermis and tendon. Mutations in this gene are associated with osteogenesis imperfecta types I-IV, Ehlers-Danlos syndrome type VIIA, Ehlers-Danlos syndrome Classical type, Caffey Disease and idiopathic osteoporosis. Reciprocal translocations between chromosomes 17 and 22, where this gene and the gene for platelet-derived growth factor beta are located, are associated with a particular type of skin tumor called dermatofibrosarcoma protuberans, resulting from unregulated expression of the growth factor. Two transcripts, resulting from the use of alternate polyadenylation signals, have been identified for this gene. [provided by R. Dalgleish, Feb 2008]
COL1A1 Products (1)
| mRNA | Protein | Name |
|---|---|---|
| NM_000088.4 | NP_000079.2 | collagen alpha-1(I) chain preproprotein |
| Molecular Function GO Annotation | Evidence | References | Source |
|---|---|---|---|
| enables identical protein binding |
IDA
IDA: Inferred from direct assay
|
17211858 | GOA |
| enables platelet-derived growth factor binding |
IDA
IDA: Inferred from direct assay
|
8900172 | GOA |
| enables protease binding |
IPI
IPI: Inferred from physical interaction
|
19932771 | GOA |
| enables protein binding |
IPI
IPI: Inferred from physical interaction
|
14749390 | GOA |
| Cellular Component GO Annotation | Evidence | References | Source |
|---|---|---|---|
| part of collagen type I trimer |
IDA
IDA: Inferred from direct assay
|
19932771 | GOA |
| part of collagen type I trimer |
IMP
IMP: Inferred from mutant phenotype
|
14976317 | GOA |
| part of collagen type I trimer |
IPI
IPI: Inferred from physical interaction
|
26848503 | GOA |
| located in extracellular space |
IMP
IMP: Inferred from mutant phenotype
|
20603131 | GOA |
COL1A1 Protein Structure
VWC: von Willebrand factor type C domain (40 - 95)
Collagen: Collagen triple helix repeat (20 copies) (109 - 158)
Collagen: Collagen triple helix repeat (20 copies) (179 - 237)
Collagen: Collagen triple helix repeat (20 copies) (236 - 295)
Collagen: Collagen triple helix repeat (20 copies) (296 - 354)
Collagen: Collagen triple helix repeat (20 copies) (356 - 414)
Collagen: Collagen triple helix repeat (20 copies) (416 - 474)
Collagen: Collagen triple helix repeat (20 copies) (476 - 533)
Collagen: Collagen triple helix repeat (20 copies) (779 - 837)
Collagen: Collagen triple helix repeat (20 copies) (839 - 898)
Collagen: Collagen triple helix repeat (20 copies) (893 - 942)
Collagen: Collagen triple helix repeat (20 copies) (1019 - 1077)
Collagen: Collagen triple helix repeat (20 copies) (1079 - 1137)
Collagen: Collagen triple helix repeat (20 copies) (1133 - 1191)
COLFI: Fibrillar collagen C-terminal domain (1245 - 1463)
- 0
- 300
- 600
- 900
- 1200
- 1464 a.a.
| Protein Preferred Names | Protein Names | |
|---|---|---|
|
collagen alpha-1(I) chain |
|
COL1A1 Protein-protein interaction Information
|
Type
|
Protein Name | Protein ID | Interactor | Interactor Species | Interactor ID | Detection Method | References |
|---|---|---|---|---|---|---|---|
|
Intra
|
COL1A1 | P02452 | FN1 | Homo sapiens | P02751 | 26848503 | |
|
Intra
|
COL1A1 | P02452 | FN1 | Homo sapiens | P02751 | 25290767 | |
|
Intra
|
COL1A1 | P02452 | KEAP1 | Homo sapiens | Q14145 | 32296183 | |
|
Intra
|
COL1A1 | P02452 | KEAP1 | Homo sapiens | Q14145 | 32296183 | |
|
Intra
|
COL1A1 | P02452 | KEAP1 | Homo sapiens | Q14145 | 32296183 | |
|
Intra
|
COL1A1 | P02452 | COL1A2 | Homo sapiens | P08123 | 26848503 | |
|
Intra
|
COL1A1 | P02452 | COL1A2 | Homo sapiens | P08123 | 26848503 | |
|
Cross
|
COL1A1 | P02452 | all3_aedae | Aedes aegypti | O01949 | 20015075 | |
|
Cross
|
COL1A1 | P02452 | all3_aedae | Aedes aegypti | O01949 | 20015075 |
COL1A1 Antibodies
| Cat. No. | Product Name | Application | Reactivity |
|---|---|---|---|
| HY-P81227 | Collagen I Antibody | WB, IHC-P | Human, Mouse, Rat, Rabbit |
| HY-P85777 | Collagen I Antibody (YA5469) | ICC/IF, IHC-P | Human, Mouse, Rat |
| HY-P85909 | Collagen I Antibody (YA5601) | IHC-P, WB, ICC/IF, ELISA | Human, Mouse, Rat |
| HY-P86101 | Collagen I Antibody (YA5793) | WB, IHC-P, ICC/IF, IP, ELISA | Human, Mouse, Rat |
Related Diseases
| Diseases | Alias | |
|---|---|---|
| Caffey Disease |
|
|
| Osteogenesis Imperfecta, Type I |
|
|
| Combined Osteogenesis Imperfecta And Ehlers-Danlos Syndrome 1 |
|
|
| Ehlers-Danlos Syndrome, Arthrochalasia Type, 1 |
|
|
| Osteogenesis Imperfecta, Type Iii |
|
|
| Osteoporosis |
|
|
| Osteogenesis Imperfecta, Type Iv |
|
|
| Osteogenesis Imperfecta, Type Ii |
|
|
| Classic Ehlers-Danlos Syndrome |
|
|
| Hypermobile Ehlers-Danlos Syndrome |
|
|
| Asphyxia Neonatorum |
|
|
| Brittle Bone Disorder |
|
|
| Ehlers-Danlos/Osteogenesis Imperfecta Syndrome |
|
|
| Ehlers-Danlos Syndrome, Arthrochalasia Type, 2 |
|
|
| Epiphyseal Dysplasia, Multiple, 1 |
|
|
| Dermatofibrosarcoma Protuberans |
|
|
| Dentinogenesis Imperfecta |
|
|
| High Bone Mass Osteogenesis Imperfecta |
|
|
| Blood Group, P1pk System |
|
|
| Primary Bone Dysplasia |
|
|
| Ehlers-Danlos Syndrome |
|
|
| Hypertelorism |
|
|
| Osteochondrodysplasia |
|
|
| Ehlers-Danlos Syndrome, Classic Type, 1 |
|
|
| Phenylketonuria |
|
|
| Collagen Disease |
|
|
| Myositis Ossificans |
|
|
| Otosclerosis |
|
|
| Van Buchem Disease |
|
|
| Hyperostosis |
|
|
| Aortic Aneurysm, Familial Thoracic 4 |
|
|
| Syringomyelia |
|
|
| Osteoporosis, Juvenile |
|
|
| Aortic Aneurysm, Familial Thoracic 1 |
|
|
| X-Linked Alport Syndrome |
|
|
| Sclerosteosis |
|
|
| Scoliosis |
|
|
| Pelvic Organ Prolapse |
|
|
| Oral Submucous Fibrosis |
|
|
| Axenfeld-Rieger Syndrome |
|
|
| Bone Development Disease |
|
|
| Achondroplasia |
|
|
| Spinal Stenosis |
|
|
| Alport Syndrome |
|
|
| Pulmonary Fibrosis |
|
|
| Marfan Syndrome |
|
|
| Skin Sarcoma |
|
|
| Fibroosseous Pseudotumor Of Digits |
|
|
| Myopia |
|
|
| Osteogenesis Imperfecta, Type Vii |
|
|
| Scleroderma, Familial Progressive |
|
|
| Carpal Tunnel Syndrome |
|
|
| Osteogenesis Imperfecta, Type Vi |
|
|
| Endosteal Hyperostosis, Autosomal Dominant |
|
|
| Bone Disease |
|
|
| Systemic Scleroderma |
|
|
| Primary Hyperparathyroidism |
|
|
| Morpheaform Basal Cell Carcinoma |
|
|
| Breast Scirrhous Carcinoma |
|
|
| Connective Tissue Disease |
|
|
| Bruck Syndrome |
|
|
| Fibrogenesis Imperfecta Ossium |
|
|
| Intervertebral Disc Disease |
|
|
| Fibrosarcoma |
|
|
| Stickler Syndrome |
|
|
| Pancreatic Cancer |
|
|
| Cutaneous Fibrous Histiocytoma |
|
|
| Epicondylitis |
|
|
| Hypermobility Syndrome |
|
|
| Epidermolysis Bullosa Simplex |
|
|
| Syndromic X-Linked Intellectual Disability Cabezas Type |
|
|
| Osteogenesis Imperfecta, Type V |
|
|
| Skin Benign Neoplasm |
|
|
| Tetralogy Of Fallot |
|
|
| Keratoconus |
|
|
| Hypophosphatasia, Childhood |
|
|
| Joubert Syndrome 6 |
|
|
| Bone Structure Disease |
|
|
| Pseudosarcomatous Fibromatosis |
|
|
| Diffuse Scleroderma |
|
|
| Bone Remodeling Disease |
|
|
| Marshall Syndrome |
|
|
| Localized Scleroderma |
|
|
| Bone Resorption Disease |
|
|
| Non-Alcoholic Steatohepatitis |
|
|
| Ureteral Disease |
|
|
| Congenital Hypothyroidism |
|
|
| Beach Ear |
|
|
| Amebiasis |
|
|
| Cleidocranial Dysplasia |
|
|
| Aortic Valve Disease 1 |
|
|
| Stickler Syndrome, Type I |
|
|
| Loeys-Dietz Syndrome |
|
|
| Myocardial Infarction |
|
|
| Interstitial Lung Disease 2 |
|
|
| Distal Arthrogryposis |
|
|
| Cystic Fibrosis |
|
|
| Plantar Fascial Fibromatosis |
|
|
| Orthostatic Intolerance |
|
|
| Osteogenesis Imperfecta, Type Xi |
|
|
| Diabetes Mellitus |
|
|
| Tooth Agenesis |
|
|
| Dilated Cardiomyopathy |
|
|
Orthologs Information
| Species | Symbol | Source | ID |
|---|---|---|---|
| Felis catus | COL1A1 | VGNC | VGNC:61054 |
| Canis familiaris | COL1A1 | VGNC | VGNC:39464 |
| Mus musculus | COL1A1 | MGD | MGI:88467 |
| Rattus norvegicus | COL1A1 | RGD | RGD:61817 |
| Macaca mulatta | COL1A1 | VGNC | VGNC:82129 |
| Bos taurus | COL1A1 | VGNC | VGNC:27560 |
| Others | COL1A1 | NCBI |