PCDHA1 - protocadherin alpha 1 Gene
Also Known as PCDH-ALPHA1
Species: Homo sapiens
About PCDHA1
This gene has 3 transcripts (splice variants), 17 orthologues and 61 paralogues.
Summary
This gene is a member of the protocadherin alpha gene cluster, one of three related gene clusters tandemly linked on chromosome five that demonstrate an unusual genomic organization similar to that of B-cell and T-cell receptor gene clusters. The alpha gene cluster is composed of 15 Cadherin superfamily genes related to the mouse CNR genes and consists of 13 highly similar and 2 more distantly related coding sequences. The tandem array of 15 N-terminal exons, or variable exons, are followed by downstream C-terminal exons, or constant exons, which are shared by all genes in the cluster. The large, uninterrupted N-terminal exons each encode six Cadherin ectodomains while the C-terminal exons encode the cytoplasmic domain. These neural cadherin-like cell adhesion proteins are integral plasma membrane proteins that most likely play a critical role in the establishment and function of specific cell-cell connections in the brain. Alternative splicing has been observed and additional variants have been suggested but their full-length nature has yet to be determined. [provided by RefSeq, Jul 2008]
PCDHA1 Products (3)
| mRNA | Protein | Name |
|---|---|---|
| NM_018900.4 | NP_061723.1 | protocadherin alpha-1 isoform 1 precursor |
| NM_031410.2 | NP_113598.1 | protocadherin alpha-1 isoform 2 precursor |
| NM_031411.3 | NP_113599.1 | protocadherin alpha-1 isoform 3 precursor |
PCDHA1 Protein Structure
Cadherin_2: Cadherin-like (29 - 111)
Cadherin: Cadherin domain (142 - 233)
Cadherin: Cadherin domain (247 - 341)
Cadherin: Cadherin domain (359 - 445)
Cadherin: Cadherin domain (460 - 556)
Cadherin: Cadherin domain (588 - 669)
- 0
- 200
- 400
- 600
- 800
- 950 a.a.
| Protein Preferred Names | Protein Names | |
|---|---|---|
|
protocadherin alpha-1 |
|
Orthologs Information
| Species | Symbol | Source | ID |
|---|---|---|---|
| Rattus norvegicus | PCDHA1 | RGD | RGD:735016 |
| Mus musculus | PCDHA1 | MGD | MGI:2150982 |