1. Gene
  2. PCDHA1 - protocadherin alpha 1 Gene

PCDHA1 - protocadherin alpha 1 Gene

Homo sapiens

Also known as PCDH-ALPHA1

Gene ID: 56147 | Gene type: protein coding

About PCDHA1

Cytogenetic location: 5q31.3 Genomic coordinates (GRCh38): 5:140,786,136-141,012,347 (from NCBI)

This gene has 3 transcripts (splice variants), 17 orthologues and 61 paralogues.

Summary

This gene is a member of the protocadherin alpha gene cluster, one of three related gene clusters tandemly linked on chromosome five that demonstrate an unusual genomic organization similar to that of B-cell and T-cell receptor gene clusters. The alpha gene cluster is composed of 15 cadherin superfamily genes related to the mouse CNR genes and consists of 13 highly similar and 2 more distantly related coding sequences. The tandem array of 15 N-terminal exons, or variable exons, are followed by downstream C-terminal exons, or constant exons, which are shared by all genes in the cluster. The large, uninterrupted N-terminal exons each encode six cadherin ectodomains while the C-terminal exons encode the cytoplasmic domain. These neural cadherin-like cell adhesion proteins are integral plasma membrane proteins that most likely play a critical role in the establishment and function of specific cell-cell connections in the brain. Alternative splicing has been observed and additional variants have been suggested but their full-length nature has yet to be determined. [provided by RefSeq, Jul 2008]

PCDHA1 Products(3)

mRNA Protein Name
NM_018900.4 NP_061723.1 protocadherin alpha-1 isoform 1 precursor
NM_031410.2 NP_113598.1 protocadherin alpha-1 isoform 2 precursor
NM_031411.3 NP_113599.1 protocadherin alpha-1 isoform 3 precursor

PCDHA1 Protein Structure

Cadherin_2

Cadherin_2: Cadherin-like (29 - 111)

Cadherin

Cadherin: Cadherin domain (142 - 233)

Cadherin

Cadherin: Cadherin domain (247 - 341)

Cadherin

Cadherin: Cadherin domain (359 - 445)

Cadherin

Cadherin: Cadherin domain (460 - 556)

Cadherin

Cadherin: Cadherin domain (588 - 669)

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  • 950 a.a.
Protein Preferred Names Protein Names

protocadherin alpha-1

KIAA0345-like 13

Orthologs Information

Species Symbol Source ID
Rattus norvegicus PCDHA1 RGD RGD:735016
Mus musculus PCDHA1 MGD MGI:2150982