2. Gene
  3. COL20A1 - collagen type XX alpha 1 chain Gene

COL20A1 - collagen type XX alpha 1 chain Gene

  • Gene
  • Protein
  • Disease
  • Agent
  • Ortholog
Homo sapiens
Gene ID: 57642 | Gene type: protein coding

About COL20A1

Cytogenetic location: 20q13.33 Genomic coordinates (GRCh38): 20:63,293,186-63,334,806 (from NCBI)

This gene has 8 transcripts (splice variants), 43 orthologues and 37 paralogues. Biased expression in brain (RPKM 3.6) and testis (RPKM 0.8).

Summary

Predicted to be located in endoplasmic reticulum lumen and extracellular region. Predicted to be part of collagen trimer. Predicted to be active in collagen-containing extracellular matrix and extracellular space. [provided by Alliance of Genome Resources, Apr 2022]

COL20A1 Products(1)

mRNA Protein Name
NM_020882.4 NP_065933.2 collagen alpha-1(XX) chain precursor

COL20A1 Protein Structure

fn3

fn3: Fibronectin type III domain (39 - 101)

VWA

VWA: von Willebrand factor type A domain (179 - 331)

fn3

fn3: Fibronectin type III domain (378 - 455)

fn3

fn3: Fibronectin type III domain (468 - 542)

fn3

fn3: Fibronectin type III domain (559 - 633)

fn3

fn3: Fibronectin type III domain (648 - 724)

fn3

fn3: Fibronectin type III domain (742 - 820)

Collagen

Collagen: Collagen triple helix repeat (20 copies) (1071 - 1127)

Collagen

Collagen: Collagen triple helix repeat (20 copies) (1133 - 1190)

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  • 1284 a.a.
Protein Preferred Names Protein Names

collagen alpha-1(XX) chain

collagen, type XX, alpha 1

Related Diseases

Diseases Alias
Oropouche Fever

Oropouche Virus Disease

Oropouche Mosquito-Borne Viral Fever
Marshall Syndrome

MRSHS

Deafness, Myopia, Cataract, Saddle Nose-Marshall Type

Periodic Fever, Aphthous Stomatitis, Pharyngitis And Adenitis

Pfapa Syndrome

Pfapa

Marshall Syndrome With Periodic Fever

Periodic Fever-Aphtous Stomatitis-Pharyngitis-Adenopathy Syndrome
Diseases Alias
Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

Related Agents

Pre-clinical Phase
Bioactive Molecules (1)
Cat. No. Product Name Effect
Purity Rare Diseases
HY-RS02972 COL20A1 Human Pre-designed siRNA Set A / Unkown

Orthologs Information

Species Symbol Source ID
Mus musculus COL20A1 MGD MGI:1920618
Felis catus COL20A1 VGNC VGNC:80073
Bos taurus COL20A1 VGNC VGNC:27562
Macaca mulatta COL20A1 VGNC VGNC:84578
Rattus norvegicus COL20A1 RGD RGD:1563901
Canis familiaris COL20A1 VGNC VGNC:39466