COL20A1 - collagen type XX alpha 1 chain Gene

Species: Homo sapiens

Gene Type: protein coding
Gene ID: 57642

About COL20A1

Cytogenetic location: 20q13.33 Genomic coordinates (GRCh38): 20:63,293,186-63,334,806 (from NCBI)

This gene has 8 transcripts (splice variants), 43 orthologues and 37 paralogues. Biased expression in brain (RPKM 3.6) and testis (RPKM 0.8).

Summary

Predicted to be located in endoplasmic reticulum lumen and extracellular region. Predicted to be part of Collagen trimer. Predicted to be active in collagen-containing extracellular matrix and extracellular space. [provided by Alliance of Genome Resources, Apr 2022]

COL20A1 Products (1)

mRNA Protein Name
NM_020882.4 NP_065933.2 collagen alpha-1(XX) chain precursor

Gene Ontology

  • Molecular Function
Molecular Function GO Annotation Evidence References Source
enables protein binding IPI
IPI: Inferred from physical interaction
25416956 GOA
EXP: Inferred from Experiment IDA: Inferred from direct assay IPI: Inferred from physical interaction IMP: Inferred from mutant phenotype IGI: Inferred from genetic interaction IEP: Inferred from expression pattern

COL20A1 Protein Structure

fn3

fn3: Fibronectin type III domain (39 - 101)

VWA

VWA: von Willebrand factor type A domain (179 - 331)

fn3

fn3: Fibronectin type III domain (378 - 455)

fn3

fn3: Fibronectin type III domain (468 - 542)

fn3

fn3: Fibronectin type III domain (559 - 633)

fn3

fn3: Fibronectin type III domain (648 - 724)

fn3

fn3: Fibronectin type III domain (742 - 820)

Collagen

Collagen: Collagen triple helix repeat (20 copies) (1071 - 1127)

Collagen

Collagen: Collagen triple helix repeat (20 copies) (1133 - 1190)

  • 0
  • 200
  • 400
  • 600
  • 800
  • 1000
  • 1200
  • 1284 a.a.
Protein Preferred Names Protein Names

collagen alpha-1(XX) chain

  • collagen, type XX, alpha 1

Related Diseases

Diseases Alias
Oropouche Fever

  • Oropouche Virus Disease

  • Oropouche Mosquito-Borne Viral Fever
Marshall Syndrome

  • MRSHS

  • Deafness, Myopia, Cataract, Saddle Nose-Marshall Type

  • Periodic Fever, Aphthous Stomatitis, Pharyngitis And Adenitis

  • Pfapa Syndrome

  • Pfapa

  • Marshall Syndrome With Periodic Fever

  • Periodic Fever-Aphtous Stomatitis-Pharyngitis-Adenopathy Syndrome
Diseases Alias
Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

Related Agents

  • Pre-clinical Phase

Pre-clinical Phase

Bioactive Molecules (1)
Cat. No. Product Name
Effect
Purity
Rare Diseases
HY-RS02972 COL20A1 Human Pre-designed siRNA Set A Pre-designed Set / Unkown

Orthologs Information

Species Symbol Source ID
Mus musculus COL20A1 MGD MGI:1920618
Felis catus COL20A1 VGNC VGNC:80073
Bos taurus COL20A1 VGNC VGNC:27562
Macaca mulatta COL20A1 VGNC VGNC:84578
Rattus norvegicus COL20A1 RGD RGD:1563901
Canis familiaris COL20A1 VGNC VGNC:39466
Others COL20A1 NCBI