CDH23 - cadherin related 23 Gene
Also Known as PITA5; USH1D; CDHR23
Species: Homo sapiens
About CDH23
This gene has 17 transcripts (splice variants), 221 orthologues, 33 paralogues and is associated with 11 phenotypes. Broad expression in ovary (RPKM 4.2), fat (RPKM 2.9) and 18 other tissues.
Summary
This gene is a member of the Cadherin superfamily, whose genes encode calcium dependent cell-cell adhesion glycoproteins. The encoded protein is thought to be involved in stereocilia organization and hair bundle formation. The gene is located in a region containing the human deafness loci DFNB12 and USH1D. Usher syndrome 1D and nonsyndromic autosomal recessive deafness DFNB12 are caused by allelic mutations of this cadherin-like gene. Upregulation of this gene may also be associated with breast Cancer. Alternative splice variants encoding different isoforms have been described. [provided by RefSeq, May 2013]
CDH23 Products (9)
| mRNA | Protein | Name |
|---|---|---|
| NM_001171930.2 | NP_001165401.1 | cadherin-23 isoform 3 precursor |
| NM_001171931.2 | NP_001165402.1 | cadherin-23 isoform 4 precursor |
| NM_001171932.2 | NP_001165403.1 | cadherin-23 isoform 5 precursor |
| NM_001171933.1 | NP_001165404.1 | cadherin-23 isoform 6 |
| NM_001171934.1 | NP_001165405.1 | cadherin-23 isoform 7 |
| NM_001171935.1 | NP_001165406.1 | cadherin-23 isoform 8 |
| NM_001171936.1 | NP_001165407.1 | cadherin-23 isoform 9 |
| NM_022124.6 | NP_071407.4 | cadherin-23 isoform 1 precursor |
| NM_052836.4 | NP_443068.1 | cadherin-23 isoform 2 precursor |
| Molecular Function GO Annotation | Evidence | References | Source |
|---|---|---|---|
| enables protein binding |
IPI
IPI: Inferred from physical interaction
|
12485990 | GOA |
| Biological Process GO Annotation | Evidence | References | Source |
|---|---|---|---|
| involved in calcium ion transport |
IMP
IMP: Inferred from mutant phenotype
|
17234811 | GOA |
| involved in equilibrioception |
IMP
IMP: Inferred from mutant phenotype
|
16679490 | GOA |
| involved in photoreceptor cell maintenance |
IMP
IMP: Inferred from mutant phenotype
|
16679490 | GOA |
| involved in regulation of cytosolic calcium ion concentration |
IMP
IMP: Inferred from mutant phenotype
|
17234811 | GOA |
| involved in sensory perception of light stimulus |
IMP
IMP: Inferred from mutant phenotype
|
16679490 | GOA |
| acts upstream of or within sensory perception of sound |
IMP
IMP: Inferred from mutant phenotype
|
15537665 | GOA |
| involved in sensory perception of sound |
IMP
IMP: Inferred from mutant phenotype
|
16679490 | GOA |
CDH23 Protein Structure
Cadherin: Cadherin domain (42 - 112)
Cadherin: Cadherin domain (149 - 231)
Cadherin: Cadherin domain (246 - 341)
Cadherin: Cadherin domain (470 - 557)
Cadherin: Cadherin domain (571 - 666)
Cadherin: Cadherin domain (681 - 773)
Cadherin: Cadherin domain (789 - 883)
Cadherin: Cadherin domain (901 - 991)
Cadherin: Cadherin domain (1005 - 1095)
Cadherin: Cadherin domain (1112 - 1203)
Cadherin: Cadherin domain (1223 - 1308)
Cadherin: Cadherin domain (1323 - 1414)
Cadherin: Cadherin domain (1431 - 1523)
Cadherin: Cadherin domain (1538 - 1629)
Cadherin: Cadherin domain (1655 - 1739)
Cadherin: Cadherin domain (1757 - 1847)
Cadherin: Cadherin domain (1862 - 1939)
Cadherin: Cadherin domain (2081 - 2169)
Cadherin: Cadherin domain (2185 - 2272)
Cadherin: Cadherin domain (2309 - 2397)
Cadherin: Cadherin domain (2415 - 2505)
Cadherin: Cadherin domain (2520 - 2606)
Cadherin: Cadherin domain (2626 - 2710)
Cadherin: Cadherin domain (2741 - 2819)
- 0
- 600
- 1200
- 1800
- 2400
- 3000
- 3359 a.a.
| Protein Preferred Names | Protein Names | |
|---|---|---|
|
cadherin-23 |
|
Related Diseases
| Diseases | Alias | |
|---|---|---|
| Pituitary Adenoma 5, Multiple Types |
|
|
| Usher Syndrome, Type Id |
|
|
| Deafness, Autosomal Recessive 12 |
|
|
| Non-Syndromic Genetic Deafness |
|
|
| Usher Syndrome, Type I |
|
|
| Rare Genetic Deafness |
|
|
| Deafness, Autosomal Recessive 84a |
|
|
| Nonsyndromic Hearing Loss |
|
|
| Usher Syndrome Type 2 |
|
|
| Usher Syndrome |
|
|
| Usher Syndrome, Type Iia |
|
|
| Autosomal Recessive Non-Syndromic Sensorineural Deafness Type Dfnb |
|
|
| Cone-Rod Dystrophy 2 |
|
|
| Retinitis Pigmentosa |
|
|
| Fundus Dystrophy |
|
|
| Tsh Producing Pituitary Tumor |
|
|
| Prolactinoma |
|
|
| Gastrointestinal Defects And Immunodeficiency Syndrome 1 |
|
|
| Meniere Disease |
|
|
| Sensorineural Hearing Loss |
|
|
| Hearing Loss, Noise-Induced |
|
|
| Autosomal Recessive Nonsyndromic Deafness |
|
|
| Acute Hemorrhagic Leukoencephalitis |
|
|
| Ear Malformation |
|
|
| Conn'S Syndrome |
|
|
| Deafness, Autosomal Dominant 11 |
|
|
| Deafness, Autosomal Recessive |
|
|
| Deafness, Autosomal Recessive 23 |
|
|
| Deafness, Autosomal Recessive 4, With Enlarged Vestibular Aqueduct |
|
|
| Usher Syndrome, Type Ic |
|
|
| Superior Semicircular Canal Dehiscence |
|
|
| Deafness, Autosomal Recessive 2 |
|
|
| Usher Syndrome, Type If |
|
|
| Deafness, Autosomal Dominant 65 |
|
|
| Auditory System Disease |
|
|
| Deafness, Autosomal Dominant 36 |
|
|
| Deafness, Autosomal Recessive 6 |
|
|
| Usher Syndrome, Type Iic |
|
|
| Autosomal Recessive Nonsyndromic Deafness 70 |
|
|
| Deafness, Autosomal Recessive 18a |
|
|
| Deafness, Autosomal Recessive 65 |
|
|
| Acute Disseminated Encephalomyelitis |
|
|
| Retinitis Pigmentosa-Deafness Syndrome |
|
|
| Deafness, Autosomal Recessive 35 |
|
|
| Autosomal Recessive Nonsyndromic Deafness 3 |
|
|
| Deafness, Autosomal Recessive 66 |
|
|
| Deafness, Autosomal Recessive 57 |
|
|
| Deafness, Autosomal Recessive 16 |
|
|
| Deafness, Autosomal Recessive 86 |
|
|
| Digenic Disease |
|
|
| Deafness, Autosomal Recessive 77 |
|
|
| Deafness, Autosomal Dominant 3a |
|
|
| Deafness, Autosomal Recessive 67 |
|
|
| Vestibular Disease |
|
|
| Deafness, Autosomal Recessive 1a |
|
|
| Usher Syndrome, Type Iiia |
|
|
| Deafness, Autosomal Dominant 6 |
|
|
| Deafness, Autosomal Recessive 37 |
|
|
| Deafness, Autosomal Recessive 91 |
|
|
| Autosomal Recessive Nonsyndromic Deafness 36 |
|
|
| Y-Linked Deafness |
|
|
| Deafness, Autosomal Recessive 40 |
|
|
| Deafness, Autosomal Recessive 55 |
|
|
| Inner Ear Disease |
|
|
| Deafness, Autosomal Recessive 79 |
|
|
| Deafness, Autosomal Recessive 83 |
|
|
| Usher Syndrome, Type Ig |
|
|
| Deafness, Autosomal Recessive 9 |
|
|
| Bardet-Biedl Syndrome |
|
|
| Deafness, Autosomal Dominant 25 |
|
|
| Deafness, Autosomal Dominant 10 |
|
|
| Retinal Degeneration |
|
|
| Deafness, Autosomal Dominant 9 |
|
|
| Deafness, Autosomal Recessive 30 |
|
|
| Autosomal Dominant Nonsyndromic Deafness |
|
|
| Deafness, Autosomal Recessive 1b |
|
|
| Drug-Induced Hearing Loss |
|
|
| Deafness, Onychodystrophy, Osteodystrophy, Mental Retardation, And Seizures Syndrome |
|
|
| Deafness, Autosomal Dominant 4a |
|
|
| Baraitser-Winter Syndrome |
|
|
| Waardenburg'S Syndrome |
|
|
| Pendred Syndrome |
|
|
| Stickler Syndrome |
|
|
| Eye Degenerative Disease |
|
|
| Breast Cancer |
|
|
| Stargardt Disease |
|
|
| Perrault Syndrome |
|
|
| Leber Plus Disease |
|
|
| Eye Disease |
|
|
Orthologs Information
| Species | Symbol | Source | ID |
|---|---|---|---|
| Mus musculus | CDH23 | MGD | MGI:1890219 |
| Macaca mulatta | CDH23 | VGNC | VGNC:70942 |
| Bos taurus | CDH23 | VGNC | VGNC:107305 |
| Rattus norvegicus | CDH23 | RGD | RGD:619760 |
| Canis familiaris | CDH23 | VGNC | VGNC:50871 |
| Others | CDH23 | NCBI |