DC551040
DC551040 is an orally active and selective lysine demethylase 1 (LSD1) inhibitor with a human IC50 of 2.14 nM. DC551040 binds to LSD1 via π-π stacking with Trp552, polar interactions with Phe538, and covalent adduct formation with FAD, and disrupts the LSD1-GFI1B-CoREST complex. DC551040 induces H3K4me2 accumulation, apoptosis, and cell differentiation, activates STAT5, NF-κB, AKT, and IL6-STAT3 pathways, and upregulates IL6 expression. DC551040 can be used for the research of acute myeloid leukemia.
For research use only. We do not sell to patients.
- CAS No.: 2133291-32-2
- Formula: C22H32FN3O2
- Molecular Weight:389.51
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Storage:
Please store the product under the recommended conditions in the Certificate of Analysis.
Biological Activity
Description
IC50 & Target
[1]|
LSD1 2.14 nM (IC50) |
In Vitro
DC551040 (1 h) potently inhibits recombinant human LSD1 enzymatic activity with an IC50 of 2.14 nM[1].
DC551040 exhibits excellent selectivity for recombinant human LSD1 over recombinant human LSD2, MAO-A, and MAO-B[1].
DC551040 (300 nM; 1 h pre-incubation) irreversibly inhibits recombinant human LSD1, as enzyme activity does not recover post-dilution[1].
DC551040 (50-250 nM; 24 h) disrupts the LSD1-GFI1B-CoREST complex in MV-4-11 AML cells[1].
DC551040 (7 days) potently inhibits proliferation of MV-4-11, Kasumi-1, and HL-60 AML cell lines with IC50 values of 79.51 nM, 25.77 nM, and 40.35 nM respectively, while showing weak activity against non-AML blood cancer cell lines[1].
DC551040 (7 days) inhibits proliferation of AML patient-derived cells with IC50 values ranging from 0.68 nM to 4157 nM across four samples[1].
DC551040 (0.5-4 μM; 72 h) induces dose-dependent apoptosis in MV-4-11 AML cells, with apoptosis rates of 7.16%, 7.78%, and 10.76%, respectively[1].
DC551040 (24 h) induces differentiation in MV-4-11 AML cells, as shown by increased CD86 expression and characteristic morphological changes[1].
DC551040 (0.1-2 μM; 1-7 days) dose-dependently increases H3K4me2 levels in MV-4-11 AML cells after 1, 3, 5, or 7 days of treatment[1].
DC551040 has low toxicity to normal peripheral blood mononuclear cells, with an IC50 greater than 10 μM[1].
DC551040 (1-5 μM; 12 h) upregulates STAT3 phosphorylation in MV-4-11 AML cells after 12 h treatment at 1 μM or 5 μM[1].
DC551040 (0.3-3 μM; 48 h) dose-dependently upregulates IL6, MYC, CCL5, and VEGFA mRNA expression in MOLM-13, MV-4-11, and HL-60 AML cells after 48 h treatment[1].
DC551040 (0.23-5000 nM; 10 days) and HHT (HY-14944) act synergistically to inhibit proliferation of MOLM-13, MV-4-11, HL-60, Kasumi-1 AML cell lines, and AML PDC (32#) cells, with strong synergy scores (ZIP >10, Bliss score 21.25) after 10 days of combined treatment[1].
DC551040 (0.5 μM; 24 h) plus HHT significantly increases Caspase 3/7 activity in MV-4-11 AML cells after 24 h treatment[1].
MedChemExpress (MCE) has not independently confirmed the accuracy of these methods. They are for reference only. Further protocols information, click here.
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Cell Line:MV-4-11 AML cells
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Concentration:50 nM; 250 nM
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Incubation Time:24 h
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Result:Disrupted the association between LSD1 and GFI1B, as shown by reduced co-immunoprecipitation of LSD1 with GFI1B.
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Cell Line:MV-4-11 AML cells
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Concentration:0.5 μM; 2 μM; 4 μM
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Incubation Time:72 h
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Result:Induced apoptosis in a dose-dependent manner: 7.16% apoptosis at 0.5 μM, 7.78% at 2 μM, and 10.76% at 4 μM, compared to 4.07% in the DMSO control.
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Cell Line:MV-4-11 AML cells
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Concentration:0.1 μM; 0.5 μM; 2 μM
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Incubation Time:1 day, 3 days, 5 days, 7 days
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Result:Increased H3K4me2 levels in a dose-dependent manner across all time points: at 1 day, relative ratios were 1.01 at 0.1 μM, 1.25 at 0.5 μM, 1.25 at 2 μM; at 3 days, 1.20 at 0.1 μM, 1.67 at 0.5 μM, 1.51 at 2 μM; at 5 days, 1.22 at 0.1 μM, 1.52 at 0.5 μM, 1.53 at 2 μM; at 7 days, 1.11 at 0.1 μM, 1.25 at 0.5 μM, 1.35 at 2 μM.
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Cell Line:MV-4-11 AML cells
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Concentration:1 μM; 5 μM
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Incubation Time:12 h
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Result:Upregulated phosphorylation of STAT3.
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Cell Line:MOLM-13, MV-4-11, HL-60 AML cells
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Concentration:0.3 μM; 1 μM; 3 μM
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Incubation Time:48 h
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Result:Dose-dependently upregulated IL6 mRNA expression in MOLM-13, MV-4-11, and HL-60 cells.
Dose-dependently upregulated MYC, CCL5, and VEGFA mRNA expression in MOLM-13 cells.
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Cell Line:MV-4-11 AML cells
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Concentration:0.5 μM; 0.5 μM plus 5 nM HHT
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Incubation Time:24 h
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Result:Significantly increased Caspase 3/7 activity (to ~3-fold) compared to either monotherapy (both ~1.5-fold) or DMSO control (~1-fold).
Parmacokinetics
| Species | Dose | Route | AUC0-t | MRT0-t | CL | F | Vss | Cmax | T1/2 | Tmax |
|---|---|---|---|---|---|---|---|---|---|---|
| Mice[1] | 20 mg/kg | p.o. | 2566 ng·h/mL | / | / | 74.4 % | 18.6 L/kg | 1257 ng/mL | 7.96 h | 0.5 h |
| Mice[1] | 10 mg/kg | i.v. | 1712 ng·h/mL | 3.18 h | 97.4 mL/min/kg | / | / | / | / | / |
| Rat[1] | 20 mg/kg | p.o. | 5777 ng·h/mL | / | / | 92.0 % | 14.0 L/kg | 851 ng/mL | 3.34 h | 3 h |
| Rat[1] | 10 mg/kg | i.v. | 3133 ng·h/mL | 4.37 h | 53.2 mL/min/kg | / | / | / | / | / |
| Dog[1] | 5 mg/kg | p.o. | 10940 ng·h/mL | / | / | 78.6 % | 6.76 L/kg | 850 ng/mL | 10.5 h | 1.2 h |
| Dog[1] | 2 mg/kg | i.v. | 10940 ng·h/mL | 6258 h | 19.5 mL/min/kg | / | / | / | / | / |
In Vivo
DC551040 (5-10 mg/kg; p.o.; daily; 22 days) exerts dose-dependent antitumor activity in MV-4-11 xenograft mice, achieving a TGI of 61.23% at 10 mg/kg daily oral dosing, and induces dose-dependent upregulation of the CD86 differentiation biomarker[1].
DC551040 (0.5-4 mg/kg; p.o.; daily; 21 days) dose-dependently extends survival in mice with disseminated MV-4-11 AML[1].
DC551040 (1 mg/kg; p.o.; daily; 28 days) synergizes with HHT to significantly extend survival in mice with disseminated MV-4-11 AML[1].
DC551040 (2 mg/kg; p.o.; daily; 21 days) reduces residual leukemia burden in AML patient-derived xenograft mice, and synergizes with HHT to enhance this effect[1].
DC551040 (2 mg/kg; p.o.; daily; up to 21 days) induces dynamic activation of immune and inflammatory pathways, alongside time-dependent metabolic reprogramming, in MV-4-11 xenograft tumors[1].
MedChemExpress (MCE) has not independently confirmed the accuracy of these methods. They are for reference only.
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Animal Model:Nu/Nu nude mice (subcutaneously inoculated in the right flank with 5 × 106 Kasumi-1 cells for a subcutaneous xenograft model)[1]
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Dosage:0.5 mg/kg; 1 mg/kg; 2 mg/kg
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Administration:p.o.; daily; 17 days
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Result:Demonstrated dose-dependent tumor suppressive activity, with corresponding tumor growth inhibition (TGI) rates of 48.82%, 60.81%, and 86.99%, respectively.
Exhibited superior antitumor effect at 2 mg/kg compared to GSK2879552 (HY-18632) at 2 mg/kg.
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Animal Model:Nu/Nu nude mice (subcutaneously inoculated in the right flank with 5 × 106 MV-4-11 cells for a subcutaneous xenograft model)[1]
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Dosage:5 mg/kg; 10 mg/kg
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Administration:p.o.; daily; 22 days
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Result:Demonstrated dose-dependent tumor suppressive activity, with TGI rates of 41.08% and 61.23%, respectively.
Showed significantly better tumor inhibitory effect at 10 mg/kg compared to GSK2879552 at 10 mg/kg .
Caused dose-dependent upregulation of CD86 positivity in tumor tissues, with higher CD86 expression observed at 10 mg/kg compared to 5 mg/kg.
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Animal Model:
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Dosage:0.5 mg/kg; 2 mg/kg; 4 mg/kg
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Administration:p.o.; daily; 21 days
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Result:Demonstrated dose-dependent improvement in mouse survival, with longer survival observed at higher doses compared to vehicle control.
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Animal Model:
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Dosage:1 mg/kg
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Administration:p.o.; daily; 28 days
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Result:Combination treatment with homoharringtonine (HHT, 0.5 mg/kg) significantly extended median mouse survival to 57.5 days, compared to 47.5 days for monotherapy and 48.5 days for HHT monotherapy.
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Animal Model:B-NDG mice (received tail
vein injection of 1 × 107 primary AML cells for intravenous engraft-
ment)[1] -
Dosage:2 mg/kg
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Administration:p.o.; daily; 21 days
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Result:Significantly reduced the proportion of human CD33+ cells in mouse bone marrow compared to vehicle control.
Combination treatment with HHT (0.5 mg/kg) produced a further significant reduction in CD33+ cells, demonstrating a synergistic effect.
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Animal Model:Nu/Nu nude mice (subcutaneously inoculated in the right flank with 5 × 106 MV-4-11 cells for a subcutaneous xenograft model)[1]
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Dosage:2 mg/kg
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Administration:p.o.; daily; up to 21 days
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Result:Induced dynamic changes in protein and gene expression: 233, 276, and 256 proteins were significantly changed at 3, 7, and 21 days, respectively (|log2(fold change)| > 0.585 and p < 0.05).
Activated immune and inflammation-related pathways (including IL6-JAK-STAT3, IL2-STAT5, interferon-γ response) across all time points.
Caused time-dependent alterations in metabolic pathways: oxidative phosphorylation was weakened at 21 days, carbon metabolism and glycolysis/gluconeogenesis were enhanced at 21 days, fatty acid metabolism decreased at 3 days then increased at 7 and 21 days.
Chemical Information
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CAS No. 2133291-32-2
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Molecular Weight 389.51
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Formula C22H32FN3O2
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SMILES
FC1(CCN(C(OCC2CCNCC2)=O)CC1)CN[C@H](C3)[C@@H]3C4=CC=CC=C4
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Shipping
Room temperature in continental US; may vary elsewhere.
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Storage
Please store the product under the recommended conditions in the Certificate of Analysis.
Protocols
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RNA extraction experimental
By lysing cells, releasing RNA, and removing impurities such as proteins and DNA, high-purity RNA products are finally obtained. The commonly used traditional method is the guanidine isothiocyanate/phenol/chloroform method (Trizol), which is suitable for a variety of animal materials including animal tissues, microorganisms, cultured cells, etc., and most plant materials.
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Apoptosis
Apoptosis, also called programmed cell death, is generally characterized by distinct morphological characteristics.
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TUNEL staining for apoptotic DNA fragmentation
TUNEL staining detects DNA strand breaks by using terminal deoxynucleotidyl transferase to add labeled nucleotides to exposed 3′-OH DNA termini, generating either microscopic staining in fixed cells or tissue sections, or fluorescence/cytometric signal in cell suspensions. TUNEL positivity reflects DNA fragmentation but should not be interpreted alone as definitive apoptosis, because TUNEL can also label necrotic, autolytic, mechanically damaged, or DNA-repair-associated DNA breaks.
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Cell Cytotoxicity Assay
Cytotoxicity assays are usually based on the assessment of cell membrane damage, which can also be indirectly detected by measuring cell viability. Detection methods include MTT assay, CKK-8 assay, LDH assay and ATP assay, etc.
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Annexin V plus membrane-impermeant dye apoptosis staining
Annexin V-based apoptosis assays rely on the detection of phosphatidylserine (PS) externalization from the inner leaflet of the plasma membrane to the outer leaflet, an early biochemical hallmark of apoptosis. Fluorescently labeled Annexin V binds PS in a calcium-dependent manner, enabling identification of early apoptotic cells by flow cytometry or fluorescence microscopy. When combined with a membrane-impermeant DNA-binding dye (e. g. , propidium iodide), this approach allows discrimination between viable (Annexin V−/dye−), early apoptotic (Annexin V+/dye−), and late apoptotic or necrotic (Annexin V+/dye+) cell populations by assessing membrane integrity and PS exposure.
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Apoptosis Solutions
Apoptosis is a regulated, generally non-lytic cell-death pathway that removes unwanted, damaged, infected, or abnormal cells through coordinated morphological changes, caspase activation, DNA fragmentation, and membrane remodeling. The intrinsic apoptosis pathway is controlled mainly by mitochondrial outer membrane permeabilization, BCL-2 family proteins, cytochrome c release, apoptosome formation, caspase-9 activation, and downstream executioner caspase-3/7 activation. The extrinsic apoptosis pathway is initiated by death receptors such as Fas, TNFR, and TRAIL receptors, which recruit adaptor proteins and activate caspase-8 before engaging executioner caspases or mitochondrial amplification through BID cleavage. Apoptosis is linked to many phenotypes, including cancer cell killing, tissue homeostasis, immune regulation, neurodegeneration, infection response, and treatment-induced cytotoxicity; unresolved questions include how apoptosis interacts with necroptosis, pyroptosis, ferroptos
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Research Protocol for Inflammation-related Diseases
The NLRP3 inflammasome is a cytosolic innate immune signaling platform that integrates priming signals and danger-signal activation to promote caspase-1 activation, maturation of IL-1β and IL-18, and gasdermin D-mediated pyroptotic cell death. The core experimental logic is to determine whether inflammatory disease phenotypes are driven by increased NLRP3 expression, ASC-containing inflammasome assembly, caspase-1 cleavage, GSDMD cleavage, and extracellular release of IL-1β/IL-18 rather than by nonspecific cell injury alone. The pathway is strongly linked to inflammation-related disease phenotypes because monosodium urate crystals activate NALP3/NLRP3 inflammasome signaling in gout-like crystal inflammation, cholesterol crystals activate NLRP3 inflammasomes in atherogenesis models, and DSS-induced intestinal inflammation has been reported to involve NLRP3 inflammasome activity. However, experimental colitis studies also show context-dependent protective effects of NLRP3 inflammasome co
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iPSC cell differentiation
Induced pluripotent stem cells (iPSCs) are a type of cell that has similar properties to embryonic stem cells through somatic cell reprogramming.
Purity & Documentation
References
Calculators
Concentration (start) × Volume (start) = Concentration (final) × Volume (final)