ERCC6 - ERCC excision repair 6, chromatin remodeling factor Gene
Also Known as CSB; CKN2; COFS; ARMD5; COFS1; POF11; RAD26; UVSS1; CSB-PGBD3
Species: Homo sapiens
About ERCC6
This gene has 21 transcripts (splice variants), 194 orthologues, 30 paralogues and is associated with 15 phenotypes. Ubiquitous expression in thyroid (RPKM 2.7), skin (RPKM 2.1) and 25 other tissues.
Summary
This gene encodes a DNA-binding protein that is important in transcription-coupled excision repair. The encoded protein has ATP-stimulated ATPase activity, interacts with several transcription and excision repair proteins, and may promote complex formation at DNA repair sites. Mutations in this gene are associated with Cockayne syndrome type B and cerebrooculofacioskeletal syndrome 1. Alternative splicing occurs between a splice site from exon 5 of this gene to the 3' splice site upstream of the open reading frame (ORF) of the adjacent gene, piggyback-derived-3 (GeneID:267004), which activates the alternative polyadenylation site downstream of the piggyback-derived-3 ORF. The resulting transcripts encode a fusion protein that shares sequence with the product of each individual gene. [provided by RefSeq, Mar 2016]
ERCC6 Products (4)
| mRNA | Protein | Name |
|---|---|---|
| NM_000124.4 | NP_000115.1 | DNA excision repair protein ERCC-6 isoform 2 |
| NM_001277058.2 | NP_001263987.1 | ERCC6-PGBD3 fusion protein isoform 1 |
| NM_001277059.2 | NP_001263988.1 | ERCC6-PGBD3 fusion protein isoform 1 |
| NM_001346440.2 | NP_001333369.1 | DNA excision repair protein ERCC-6 isoform 2 |
| Molecular Function GO Annotation | Evidence | Verweise | Source |
|---|---|---|---|
| enables ATP binding |
IDA
IDA: Inferred from direct assay
|
12560492 | GOA |
| enables ATP-dependent activity, acting on DNA |
IDA
IDA: Inferred from direct assay
|
8999876 | GOA |
| enables ATP-dependent activity, acting on DNA |
IMP
IMP: Inferred from mutant phenotype
|
25820262 | GOA |
| enables ATP-dependent chromatin remodeler activity |
IMP
IMP: Inferred from mutant phenotype
|
29203878 | GOA |
| enables DNA binding |
IDA
IDA: Inferred from direct assay
|
8999876 | GOA |
| NOT enables DNA helicase activity |
IDA
IDA: Inferred from direct assay
|
8999876 | GOA |
| enables RNA polymerase binding |
IDA
IDA: Inferred from direct assay
|
26218421 | GOA |
| enables chromatin binding |
IDA
IDA: Inferred from direct assay
|
26620705 | GOA |
| enables chromatin binding |
IMP
IMP: Inferred from mutant phenotype
|
25820262 | GOA |
| enables protein binding |
IPI
IPI: Inferred from physical interaction
|
7663514 | GOA |
| enables protein tyrosine kinase activator activity |
IDA
IDA: Inferred from direct assay
|
17626041 | GOA |
| enables sequence-specific DNA binding |
IDA
IDA: Inferred from direct assay
|
22483866 | GOA |
| Cellular Component GO Annotation | Evidence | Verweise | Source |
|---|---|---|---|
| part of B-WICH complex |
IDA
IDA: Inferred from direct assay
|
16603771 | GOA |
| located in nucleolus |
IDA
IDA: Inferred from direct assay
|
16107709 | GOA |
| located in nucleoplasm |
IDA
IDA: Inferred from direct assay
|
16107709 | GOA |
| located in nucleus |
IDA
IDA: Inferred from direct assay
|
12560492 | GOA |
| located in site of DNA damage |
IDA
IDA: Inferred from direct assay
|
28292928 | GOA |
| part of transcription elongation factor complex |
IDA
IDA: Inferred from direct assay
|
9326587 | GOA |
ERCC6 Protein Structure
SNF2_N: SNF2 family N-terminal domain (510 - 812)
Helicase_C: Helicase conserved C-terminal domain (874 - 952)
- 0
- 300
- 600
- 900
- 1200
- 1493 a.a.
| Protein Preferred Names | Protein Names | |
|---|---|---|
|
DNA excision repair protein ERCC-6 ERCC6-PGBD3 fusion protein |
|
|
ERCC6 Protein-protein interaction Information
|
Type
|
Protein Name | Protein ID | Interactor | Interactor Species | Interactor ID | Detection Method | Verweise |
|---|---|---|---|---|---|---|---|
|
Intra
|
ERCC6 | Q03468 | ABL1 | Homo sapiens | P00519 | 17626041 | |
|
Intra
|
ERCC6 | Q03468 | ERCC8 | Homo sapiens | Q13216-1 | 7664335 |
ERCC6 Antibodies
| Art. -Nr. | Produktname | Anwendung | Reactivity |
|---|---|---|---|
| HY-P89568 | CSB Antibody (YA8912) | WB, ICC/IF, IF-Tissue, IP, ELISA | human |
Related Diseases
| Diseases | Alias | |
|---|---|---|
| Cockayne Syndrome B |
|
|
| Cerebrooculofacioskeletal Syndrome 1 |
|
|
| Premature Ovarian Failure 11 |
|
|
| De Sanctis-Cacchione Syndrome |
|
|
| Macular Degeneration, Age-Related, 5 |
|
|
| Uv-Sensitive Syndrome 1 |
|
|
| Cockayne Syndrome |
|
|
| Lung Cancer |
|
|
| Cockayne Syndrome Type Iii |
|
|
| Uv-Sensitive Syndrome |
|
|
| Genetic Non-Acquired Premature Ovarian Failure |
|
|
| Cockayne Syndrome A |
|
|
| Cerebrooculofacioskeletal Syndrome |
|
|
| Trichothiodystrophy |
|
|
| Physical Disorder |
|
|
| Xeroderma Pigmentosum, Variant Type |
|
|
| Orbital Disease |
|
|
| Xeroderma Pigmentosum, Complementation Group G |
|
|
| Pseudopapilledema |
|
|
| Lens Disease |
|
|
| Macular Degeneration, Age-Related, 1 |
|
|
| Xeroderma Pigmentosum, Complementation Group F |
|
|
| Xfe Progeroid Syndrome |
|
|
| Suppurative Otitis Media |
|
|
| Fanconi Anemia, Complementation Group Q |
|
|
| Fanconi Anemia, Complementation Group R |
|
|
| Visual Pathway Disease |
|
|
| Sensory System Disease |
|
|
| Specific Developmental Disorder |
|
|
| Eye Degenerative Disease |
|
|
| Cardiomyopathy, Dilated, 1l |
|
|
| Anterior Segment Dysgenesis 3 |
|
|
| Linear Skin Defects With Multiple Congenital Anomalies 1 |
|
|
| Chromosome 16p12.2-P11.2 Deletion Syndrome, 7.1- To 8.7-Mb |
|
|
| Spinal Muscular Atrophy, Distal, Autosomal Recessive, 2 |
|
|
| Xeroderma Pigmentosum, Complementation Group A |
|
|
| Auditory System Disease |
|
|
| Chromosome 10q26 Deletion Syndrome |
|
|
| Fanconi Anemia, Complementation Group U |
|
|
| Mullegama-Klein-Martinez Syndrome |
|
|
| Multiple Pterygium Syndrome, Escobar Variant |
|
|
| Lissencephaly 6 |
|
|
| Fanconi Anemia, Complementation Group T |
|
|
| Xeroderma Pigmentosum, Complementation Group B |
|
|
| Skin Creases, Congenital Symmetric Circumferential, 1 |
|
|
| Skin Creases, Congenital Symmetric Circumferential, 2 |
|
|
| Enophthalmos |
|
|
| Alpha Thalassemia-X-Linked Intellectual Disability Syndrome |
|
|
| Integumentary System Disease |
|
|
| Immunodeficiency 30 |
|
|
| Xeroderma Pigmentosum, Complementation Group C |
|
|
| Degeneration Of Macula And Posterior Pole |
|
|
| Ehlers-Danlos Syndrome, Musculocontractural Type, 1 |
|
|
| Cerebellar Ataxia Type 47 |
|
|
| Cardiomyopathy, Dilated, With Hypergonadotropic Hypogonadism |
|
|
| Amyloidosis, Primary Localized Cutaneous, 3 |
|
|
| Immunodeficiency With Hyper-Igm, Type 4 |
|
|
| Immunodeficiency With Hyper-Igm, Type 5 |
|
|
| Myasthenic Syndrome, Congenital, 6, Presynaptic |
|
|
| Trichothiodystrophy 3, Photosensitive |
|
|
| Skin Carcinoma |
|
|
| Inner Ear Disease |
|
|
| Rothmund-Thomson Syndrome, Type 2 |
|
|
| Mismatch Repair Cancer Syndrome |
|
|
| Cerebral Degeneration |
|
|
| Xeroderma Pigmentosum Group E |
|
|
| Autosomal Recessive Cerebellar Ataxia |
|
|
| Amyotrophic Lateral Sclerosis-Parkinsonism/Dementia Complex 1 |
|
|
| Fanconi Anemia, Complementation Group A |
|
|
| Photoparoxysmal Response 1 |
|
|
| Skin Atrophy |
|
|
| Cerebellar Disease |
|
|
| Lig4 Syndrome |
|
|
| Myasthenic Syndrome, Congenital, 10 |
|
|
| Birt-Hogg-Dube Syndrome |
|
|
| Amyotrophic Lateral Sclerosis 4, Juvenile |
|
|
| Premature Ovarian Failure 19 |
|
|
| Cranial Nerve Disease |
|
|
| Cutis Laxa, Autosomal Recessive, Type Iiia |
|
|
| Albinism, Ocular, With Late-Onset Sensorineural Deafness |
|
|
| Amenorrhea |
|
|
| Thrombocytopenia-Absent Radius Syndrome |
|
|
| Teeth Hard Tissue Disease |
|
|
| Baller-Gerold Syndrome |
|
|
| Ehlers-Danlos Syndrome, Hypermobility Type |
|
|
| Disease Of Mental Health |
|
|
| Sorsby Fundus Dystrophy |
|
|
| Rapadilino Syndrome |
|
|
| Ovarian Disease |
|
|
| Mosaic Variegated Aneuploidy Syndrome |
|
|
| Leukodystrophy, Hypomyelinating, 9 |
|
|
| Aspartylglucosaminuria |
|
|
| Telangiectasis |
|
|
| Multiple Benign Circumferential Skin Creases On Limbs |
|
|
| Doyne Honeycomb Retinal Dystrophy |
|
|
| Cystic Lymphangioma |
|
|
| Abcd Syndrome |
|
|
| Acrofacial Dysostosis 1, Nager Type |
|
|
| Eye Disease |
|
|
| Mitochondrial Dna Depletion Syndrome 4a |
|
|
| Hair Disease |
|
|
| Refractive Error |
|
|
| Pelizaeus-Merzbacher Disease |
|
|
| Premature Ovarian Failure 1 |
|
|
| Alternating Hemiplegia Of Childhood |
|
|
| Hereditary Ataxia |
|
|
| 46 Xx Gonadal Dysgenesis |
|
|
| Cornelia De Lange Syndrome 1 |
|
|
| Retinal Drusen |
|
|
| Hutchinson-Gilford Progeria Syndrome |
|
|
| Bart-Pumphrey Syndrome |
|
|
| Riddle Syndrome |
|
|
| Cataract |
|
|
| Retinal Disease |
|
|
| Exotropia |
|
|
| Corneal Dystrophy, Avellino Type |
|
|
| Roberts-Sc Phocomelia Syndrome |
|
|
| Basal Ganglia Calcification |
|
|
| Basal Ganglia Disease |
|
|
| Aicardi-Goutieres Syndrome |
|
|
| Variegate Porphyria |
|
|
| Paranoid Schizophrenia |
|
|
| Shwachman-Diamond Syndrome 1 |
|
|
| Lesch-Nyhan Syndrome |
|
|
| Megalocornea |
|
|
| Seckel Syndrome |
|
|
| Burn-Mckeown Syndrome |
|
|
| Cerebrooculofacioskeletal Syndrome 2 |
|
|
| Lynch Syndrome |
|
|
| Purine-Pyrimidine Metabolic Disorder |
|
|
| Amyotrophic Lateral Sclerosis 2, Juvenile |
|
|
| Autosomal Dominant Cerebellar Ataxia |
|
|
| Mitochondrial Dna Depletion Syndrome |
|
|
| Phacogenic Glaucoma |
|
|
| Central Nervous System Disease |
|
|
| Optic Nerve Disease |
|
|
| Testicular Disease |
|
|
| Muscle Tissue Disease |
|
|
| Acrofacial Dysostosis |
|
|
| Hypomyelinating Leukodystrophy |
|
|
| Aplastic Anemia |
|
|
| Spastic Quadriplegia |
|
|
| Nijmegen Breakage Syndrome |
|
|
| Microcephaly |
|
|
| Normal Pressure Hydrocephalus |
|
|
| Peripheral Nervous System Disease |
|
|
| Peripheral Vascular Disease |
|
|
| Ocular Motility Disease |
|
|
| Familial Adenomatous Polyposis 2 |
|
|
| Muscular Disease |
|
|
| Sporadic Breast Cancer |
|
|
| Lethal Congenital Contracture Syndrome |
|
|
| Ovarian Cystadenocarcinoma |
|
|
| Machado-Joseph Disease |
|
|
| Alpha-Thalassemia |
|
|
| Corneal Disease |
|
|
| Congenital Nervous System Abnormality |
|
|
| Communicating Hydrocephalus |
|
|
| Bladder Disease |
|
|
| Dyskeratosis Congenita |
|
|
| Bone Development Disease |
|
|
| Skin Disease |
|
|
| Myotonic Disease |
|
|
| Congenital Myasthenic Syndrome |
|
|
| Endocrine System Disease |
|
|
| Female Reproductive System Disease |
|
|
| Uveal Disease |
|
|
| Deficiency Anemia |
|
|
| Nervous System Disease |
|
|
| Leukocyte Disease |
|
|
| Cowden Syndrome |
|
|
| Blood Coagulation Disease |
|
|
| Ovarian Serous Cystadenocarcinoma |
|
|
| Premature Menopause |
|
|
| Intestinal Benign Neoplasm |
|
|
| Blood Platelet Disease |
|
|
| Disorder Of Sexual Development |
|
|
| Reproductive System Disease |
|
|
| Primary Microcephaly |
|
|
| Dentatorubral-Pallidoluysian Atrophy |
|
|
| Orofacial Cleft |
|
|
| Treacher Collins Syndrome 1 |
|
|
| Retinitis Pigmentosa |
|
|
| Cryptorchidism, Unilateral Or Bilateral |
|
|
| Tooth Agenesis |
|
|
| Myotonic Dystrophy 1 |
|
|
| Disease By Infectious Agent |
|
|
| Lymphangioma |
|
|
| Respiratory System Disease |
|
|
| Cornelia De Lange Syndrome |
|
|
| Chromosomal Disease |
|
|
| Urinary System Disease |
|
|
| Leukodystrophy |
|
|
| Malignant Ovarian Surface Epithelial-Stromal Neoplasm |
|
|
| Keratitis, Hereditary |
|
|
| Ovary Adenocarcinoma |
|
|
| 3-Methylglutaconic Aciduria, Type Iii |
|
|
| Bone Structure Disease |
|
|
| Head And Neck Cancer |
|
|
| Testicular Cancer |
|
|
| Pervasive Developmental Disorder |
|
|
| Hereditary Breast Ovarian Cancer Syndrome |
|
|
| Coloboma Of Macula |
|
|
| Primary Hyperoxaluria |
|
|
| Movement Disease |
|
|
| Hermansky-Pudlak Syndrome |
|
|
| Motor Neuron Disease |
|
|
| Sensorineural Hearing Loss |
|
|
| Connective Tissue Disease |
|
|
| Fundus Dystrophy |
|
|
| Microphthalmia |
|
|
| Basal Cell Carcinoma |
|
|
| Melanoma, Uveal |
|
|
| Renal Cell Carcinoma, Nonpapillary |
|
|
| Strabismus |
|
|
| Ptosis |
|
|
| Amyotrophic Lateral Sclerosis 1 |
|
|
| Huntington Disease |
|
|
| Neuromuscular Disease |
|
|
| Cerebral Palsy |
|
|
| Hereditary Spastic Paraplegia |
|
|
| Leukemia, Acute Myeloid |
|
|
| Osteochondrodysplasia |
|
|
| Myopathy |
|
|
| Body Mass Index Quantitative Trait Locus 11 |
|
|
Orthologs Information
| Species | Symbol | Source | ID |
|---|---|---|---|
| Macaca mulatta | ERCC6 | VGNC | VGNC:81396 |
| Rattus norvegicus | ERCC6 | RGD | RGD:1311509 |
| Mus musculus | ERCC6 | MGD | MGI:1100494 |
| Canis familiaris | ERCC6 | VGNC | VGNC:40445 |
| Bos taurus | ERCC6 | VGNC | VGNC:28572 |
| Felis catus | ERCC6 | VGNC | VGNC:97419 |
| Others | ERCC6 | NCBI |