Spatiotemporal interplay between epithelial and mesenchymal cells drives human dentinogenesis

  • Nat Commun. 2026 Feb 14;17(1):2791. doi: 10.1038/s41467-026-69545-3.
Wei Wei  #  1 Chuan Wu  #  1 Jing Sun  1 Mengjie Han  2 Xiuge Gu  1 Hanzhang Zhou  2 Xiaoshan Wu  1  3 Zongshan Shen  1  4 Chunmei Zhang  1 Jinsong Wang  5 Lei Hu  1 Lanrong Luo  6 Yuanyuan Zhang  6 Lina Hu  6 Songlin Wang  7  8  9 Ran Zhang  10  11
Affiliations
  • 1. Laboratory of Oral Health and Homeostatic Medicine, School of Stomatology and Beijing Stomatological Hospital and Beijing Laboratory of Oral Health, Capital Medical University, Beijing, China.
  • 2. Department of Oral Pathology, Peking University School and Hospital of Stomatology & National Center of Stomatology & National Clinical Research Center for Oral Diseases & National Engineering Research Center of Oral Biomaterials and Digital Medical Devices, Beijing, China.
  • 3. Academician Workstation for Oral-Maxillofacial Regenerative Medicine, Central South University, Changsha, China.
  • 4. Hospital of Stomatology, Guangdong Provincial Key Laboratory of Stomatology, Guanghua School of Stomatology, Sun Yat-sen University, Guangzhou, China.
  • 5. Department of Biochemistry and Molecular Biology, School of Basic Medical Sciences, Capital Medical University, Beijing, China.
  • 6. Department of Reproductive Regulation, Beijing Obstetrics and Gynecology Hospital, Beijing Maternal and Child Health Care Hospital, Capital Medical University, Beijing, China.
  • 7. Laboratory of Oral Health and Homeostatic Medicine, School of Stomatology and Beijing Stomatological Hospital and Beijing Laboratory of Oral Health, Capital Medical University, Beijing, China. [email protected].
  • 8. Academician Workstation for Oral-Maxillofacial Regenerative Medicine, Central South University, Changsha, China. [email protected].
  • 9. Laboratory of Oral Homeostatic Medicine, School of Medicine and SUSTech Homeostatic Medicine Institute (SHMI), Southern University of Science and Technology, Shenzhen, China. [email protected].
  • 10. Laboratory of Oral Health and Homeostatic Medicine, School of Stomatology and Beijing Stomatological Hospital and Beijing Laboratory of Oral Health, Capital Medical University, Beijing, China. [email protected].
  • 11. Department of Oral Pathology, Peking University School and Hospital of Stomatology & National Center of Stomatology & National Clinical Research Center for Oral Diseases & National Engineering Research Center of Oral Biomaterials and Digital Medical Devices, Beijing, China. [email protected].
  • # Contributed equally.
Abstract

Tooth dentin, secreted by odontoblasts, constitutes most of the tooth structure and provides support and sensory function. However, dentin defects are common and irreparable once they exceed a critical threshold. Human dentin develops from dental papilla (DP) cells under the guidance of the dental epithelium (DE). Here, we present a human tooth development atlas from initiation to erupted stage using single-cell RNA Sequencing and spatial transcriptomics, focusing on epithelial-mesenchymal interactions. This atlas reveals that DE orchestrates DP differentiation in a WNT-NOTCH sequential activation model and identifies the key signaling molecules. DLX6-AS1+ DP cells respond to dental epithelial signals and can be isolated from adult dental pulp stem cells (DPSCs). Notably, DLX6-AS1+ DPSCs successfully generate tubular dentin in an in vivo disease model of dentin defects. This research provides valuable information on human tooth development and establishes a basis for repairing regenerative dental tissue.

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