SYCE1 - synaptonemal complex central element protein 1 Gene

Also Known as CT76; POF12; SPGF15; C10orf94

Species: Homo sapiens

Gene Type: protein coding

Gene ID: 93426

About SYCE1

Cytogenetic location: 10q26.3 Genomic coordinates (GRCh38): 10:133,553,899-133,568,291 (from NCBI)

This gene has 5 transcripts (splice variants), 117 orthologues, 1 paralogue and is associated with 4 phenotypes. Biased expression in testis (RPKM 31.6), placenta (RPKM 4.3) and 1 other tissue.

Summary

This gene encodes a member of the synaptonemal complex, which links homologous chromosomes during prophase I of meiosis. The tripartite structure of the complex is highly conserved amongst metazoans. It consists of two lateral elements and a central region formed by transverse elements and a central element. The protein encoded by this gene localizes to the central element and is required for initiation and elongation of the synapsis. Allelic variants of this gene have been associated with premature ovarian failure and spermatogenic failure. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Nov 2016]

SYCE1 Products (3)

mRNA	Protein	Name
NM_001143763.2	NP_001137235.1	synaptonemal complex central element protein 1 isoform 3
NM_001143764.3	NP_001137236.1	synaptonemal complex central element protein 1 isoform 4
NM_130784.4	NP_570140.1	synaptonemal complex central element protein 1 isoform 1

Gene Ontology

Molecular Function

Molecular Function GO Annotation	Evidence	References	Source
enables protein binding	IPI IPI: Inferred from physical interaction	25416956	GOA

EXP: Inferred from Experiment IDA: Inferred from direct assay IPI: Inferred from physical interaction IMP: Inferred from mutant phenotype IGI: Inferred from genetic interaction IEP: Inferred from expression pattern

SYCE1 Protein Structure

SYCE1

0
100
200
300
351 a.a.

Protein Preferred Names	Protein Names
synaptonemal complex central element protein 1	cancer/testis antigen 76

SYCE1 Protein-protein interaction Information

Type	Protein Name	Protein ID	Interactor	Interactor Species	Interactor ID	Detection Method	References
Intra	SYCE1	Q8N0S2	CCDC102B	Homo sapiens	Q68D86	Y2H Prey Pooling	25416956
Intra	SYCE1	Q8N0S2	CCDC102B	Homo sapiens	Q68D86	Validated Y2H	25416956
Intra	SYCE1	Q8N0S2	CCHCR1	Homo sapiens	Q8TD31-3	Validated Y2H	32296183
Intra	SYCE1	Q8N0S2	TPM3	Homo sapiens	Q5VU62	Validated Y2H	25416956
Intra	SYCE1	Q8N0S2	TPM1	Homo sapiens	P09493-5	Y2H Prey Pooling	25416956
Intra	SYCE1	Q8N0S2	IQUB	Homo sapiens	Q8NA54	Y2H Array	25416956
Intra	SYCE1	Q8N0S2	BFSP2	Homo sapiens	Q13515	Y2H Prey Pooling	25416956
Intra	SYCE1	Q8N0S2	BFSP2	Homo sapiens	Q13515	Validated Y2H	25416956
Intra	SYCE1	Q8N0S2	EDRF1	Homo sapiens	Q3B7T1-5	Validated Y2H	25416956
Intra	SYCE1	Q8N0S2	CBY2	Homo sapiens	Q8NA61-2	BFG-2H	27107012
Intra	SYCE1	Q8N0S2	CBY2	Homo sapiens	Q8NA61-2	Validated Y2H	32296183
Intra	SYCE1	Q8N0S2	SPATC1L	Homo sapiens	Q9H0A9-2	Validated Y2H	32296183
Intra	SYCE1	Q8N0S2	KIFC3	Homo sapiens	Q9BVG8	Validated Y2H	25416956
Intra	SYCE1	Q8N0S2	KIFC3	Homo sapiens	Q9BVG8	Y2H Array	25416956
Intra	SYCE1	Q8N0S2	SSX2	Homo sapiens	Q16385	Y2H Array	25416956
Intra	SYCE1	Q8N0S2	SSX2	Homo sapiens	Q16385	Validated Y2H	25416956
Intra	SYCE1	Q8N0S2	RBCK1	Homo sapiens	Q9BYM8	Y2H Prey Pooling	25416956
Intra	SYCE1	Q8N0S2	HAUS1	Homo sapiens	Q96CS2	Validated Y2H	25416956
Intra	SYCE1	Q8N0S2	ZNF124	Homo sapiens	Q15973	Y2H Array	25416956
Intra	SYCE1	Q8N0S2	TXN2	Homo sapiens	Q99757	Validated Y2H	32296183
Intra	SYCE1	Q8N0S2	TSG101	Homo sapiens	Q99816	Y2H Prey Pooling	25416956
Intra	SYCE1	Q8N0S2	TSG101	Homo sapiens	Q99816	Validated Y2H	25416956
Intra	SYCE1	Q8N0S2	TSG101	Homo sapiens	Q99816	Validated Y2H	32296183
Intra	SYCE1	Q8N0S2	TSG101	Homo sapiens	Q99816	Y2H Array	25416956
Intra	SYCE1	Q8N0S2	TPM1	Homo sapiens	P09493	Validated Y2H	25416956
Intra	SYCE1	Q8N0S2	TPM1	Homo sapiens	P09493	Anti Tag CoIP	33961781
Intra	SYCE1	Q8N0S2	TPM3	Homo sapiens	P06753	Y2H Array	25416956
Intra	SYCE1	Q8N0S2	TPM3	Homo sapiens	P06753	Y2H Prey Pooling	25416956
Intra	SYCE1	Q8N0S2	TRAF1	Homo sapiens	Q13077	Y2H Array	25416956
Intra	SYCE1	Q8N0S2	TRAF1	Homo sapiens	Q13077	Validated Y2H	25416956
Intra	SYCE1	Q8N0S2	KAT5	Homo sapiens	Q92993	Validated Y2H	32296183
Intra	SYCE1	Q8N0S2	SMARCE1	Homo sapiens	Q969G3	Validated Y2H	25416956
Intra	SYCE1	Q8N0S2	SMARCE1	Homo sapiens	Q969G3	Y2H Array	25416956
Intra	SYCE1	Q8N0S2	SMARCE1	Homo sapiens	Q969G3	Y2H Prey Pooling	25416956
Intra	SYCE1	Q8N0S2	WASHC3	Homo sapiens	Q9Y3C0	Y2H Array	31515488
Intra	SYCE1	Q8N0S2	WASHC3	Homo sapiens	Q9Y3C0	Y2H Prey Pooling	25416956
Intra	SYCE1	Q8N0S2	HMG20B	Homo sapiens	Q9P0W2	Y2H Array	25416956
Intra	SYCE1	Q8N0S2	FAM161A	Homo sapiens	Q3B820	Y2H Prey Pooling	25416956
Intra	SYCE1	Q8N0S2	FAM161B	Homo sapiens	Q96MY7	MAPPIT	32296183
Intra	SYCE1	Q8N0S2	FAM161B	Homo sapiens	Q96MY7	Validated Y2H	32296183
Intra	SYCE1	Q8N0S2	TRIM41	Homo sapiens	Q8WV44	Validated Y2H	32296183
Intra	SYCE1	Q8N0S2	HSPB7	Homo sapiens	Q9UBY9	Y2H Array	25416956
Intra	SYCE1	Q8N0S2	HSPB7	Homo sapiens	Q9UBY9	Validated Y2H	25416956
Intra	SYCE1	Q8N0S2	CINP	Homo sapiens	Q9BW66	Y2H Prey Pooling	25416956
Intra	SYCE1	Q8N0S2	CINP	Homo sapiens	Q9BW66	Validated Y2H	25416956
Intra	SYCE1	Q8N0S2	CINP	Homo sapiens	Q9BW66	Y2H Array	25416956
Intra	SYCE1	Q8N0S2	CYTH3	Homo sapiens	O43739	Y2H Array	25416956
Intra	SYCE1	Q8N0S2	CYTH3	Homo sapiens	O43739	Anti Tag CoIP	33961781
Intra	SYCE1	Q8N0S2	CYTH3	Homo sapiens	O43739	Y2H Prey Pooling	25416956
Intra	SYCE1	Q8N0S2	CBY2	Homo sapiens	Q8NA61	Y2H Array	25416956
Intra	SYCE1	Q8N0S2	SKA1	Homo sapiens	Q96BD8	Y2H Array	25416956
Intra	SYCE1	Q8N0S2	SKA1	Homo sapiens	Q96BD8	Y2H Prey Pooling	25416956
Intra	SYCE1	Q8N0S2	VPS25	Homo sapiens	Q9BRG1	Validated Y2H	32296183
Intra	SYCE1	Q8N0S2	EXOC8	Homo sapiens	Q8IYI6	Y2H Prey Pooling	32296183
Intra	SYCE1	Q8N0S2	NME7	Homo sapiens	Q9Y5B8	Validated Y2H	32296183
Intra	SYCE1	Q8N0S2	BEX2	Homo sapiens	Q9BXY8	Validated Y2H	32296183
Intra	SYCE1	Q8N0S2	HOOK1	Homo sapiens	Q9UJC3	Y2H Array	25416956
Intra	SYCE1	Q8N0S2	HOOK1	Homo sapiens	Q9UJC3	Anti Tag CoIP	33961781
Intra	SYCE1	Q8N0S2	HOOK1	Homo sapiens	Q9UJC3	Y2H Prey Pooling	25416956
Intra	SYCE1	Q8N0S2	MRFAP1L1	Homo sapiens	Q96HT8	Y2H Prey Pooling	25416956
Intra	SYCE1	Q8N0S2	MRFAP1L1	Homo sapiens	Q96HT8	Y2H Array	25416956
Intra	SYCE1	Q8N0S2	ALOX5	Homo sapiens	P09917	Y2H Prey Pooling	25416956
Intra	SYCE1	Q8N0S2	STX19	Homo sapiens	Q8N4C7	Y2H Prey Pooling	25416956
Intra	SYCE1	Q8N0S2	STX19	Homo sapiens	Q8N4C7	Y2H Array	25416956

Cross: Cross-species interaction Intra: Intraspecies interaction

Related Diseases

Diseases	Alias
Spermatogenic Failure 15	SPGF15 Spermatogenic Failure, 15
Premature Ovarian Failure 12	POF12
Male Infertility With Azoospermia Or Oligozoospermia Due To Single Gene Mutation
Spermatogenic Failure	Azoospermia Spgf Spermatogenic Failure, Susceptibility To Absent Sperm Aspermatogenesis Infertility Due To Azoospermia Hypospermatogenesis Azoospermatism
46 Xx Gonadal Dysgenesis	Ovarian Dysgenesis Gonadal Dysgenesis, 46,Xx Dysgenesis, Ovarian
Spermatogenic Failure 10	SPGF10 Spermatogenic Failure With Defective Sperm Annulus
Premature Menopause	Primary Ovarian Insufficiency Premature Ovarian Failure Hypergonadotropic Hypogonadism Premature Ovarian Insufficiency Menopause - Premature Menopause Praecox Menopause Premature Menopause, Premature Female Hypergonadotropic Hypogonadism Hypergonadotrophic Ovarian Failure Primary Female Hypogonadism Pof - [Premature Ovarian Failure] Ovarian Failure Ovarian Secretion Suppression Ovary Hyposecretion Ovary Secretion Deficiency Premature Menopause Nos
Spermatogenic Failure 5	Male Infertility With Large-Headed, Multiflagellar, Polyploid Spermatozoa Infertility Associated With Multi-Tailed Spermatozoa And Excessive Dna SPGF5 Macrocephalic Sperm Head Syndrome Male Infertility Due To Macrozoospermia Infertility Associated With Multitailed Spermatozoa And Excessive Dna Macrozoospermia Male Infertility Due To Large-Headed Multiflagellar Polyploid Spermatozoa Infertility Associated With Multi-Tailed Spermatozoa And Excessive Deoxyribonucleic Acid Large-Headed Multiflagellar Polyploid Spermatozoa Male Infertility With Large-Headed Multiflagellar Polyploid Spermatozoa
Spermatogenic Failure, X-Linked, 1	Sertoli Cell-Only Syndrome Germinal Cell Aplasia Del Castillo Syndrome SPGFX1 X-Linked Spermatogenic Failure 1 Congenital Absence Of Germinal Epithelium Of Testes
Multiple Synostoses Syndrome	Symphalangism-Brachydactyly Syndrome Deafness-Hermann Type Symphalangism Syndrome Facio-Audio-Symphalangism Hearing Loss-Hermann Type Symphalangism Syndrome Wl Syndrome Multiple Synostosis Syndrome
Immunodeficiency-Centromeric Instability-Facial Anomalies Syndrome	Icf Syndrome Immunodeficiency Syndrome, Variable Ciid Centromeric Instability, Immunodeficiency Syndrome Immune Deficiency, Variable, With Centromeric Instability Of Chromosomes 1, 9, And 16 Icf
Spermatogenic Failure, Y-Linked, 2	SPGFY2 Spermatogenic Failure, Nonobstructive, Y-Linked Y-Linked Spermatogenic Failure 2 Azoospermia, Nonobstructive, Y-Linked Oligozoospermia, Nonobstructive, Y-Linked Oligospermia, Nonobstructive, Y-Linked Spermatogenic Arrest, Y-Linked Nonobstructive Y-Linked Spermatogenic Failure Spermatogenic Failure Y-Linked 2 Azoospermia Non-Obstructive Y-Linked Non-Obstructive Azoospermia And Infertility Oligospermia Non-Obstructive Y-Linked Oligozoospermia Non-Obstructive Y-Linked Spermatogenic Arrest Y-Linked Spermatogenic Failure Nonobstructive Y-Linked
Perrault Syndrome	Gonadal Dysgenesis, Xx Type, With Deafness Ovarian Dysgenesis With Sensorineural Deafness Gonadal Dysgenesis, Xx Type Gonadal Dysgenesis With Auditory Dysfunction, Autosomal Recessive Inheritance Gonadal Dysgenesis With Sensorineural Deafness, Autosomal Recessive Inheritance Xx Gonodal Dysgenesis-Deafness Syndrome Xx Gonodal Dysgenesis-Hearing Loss Syndrome Gonadal Dysgenesis Xx Type Deafness

Diseases	Alias
Waldenstroem'S Macroglobulinemia	Waldenstroem'S Macroglobulinemia Waldenstroem'S Macroglobulinemia Macroglobulinemia Of Waldenstrom Lymphoplasmacytic Lymphoma With Igm Gammopathy Lymphoplasmacytic Lymphoma Waldenstroem'S Macroglobulinemia Waldenstroem'S Macroglobulinemia Macroglobulinemia Of Waldenstrom Lymphoplasmacytic Lymphoma With Igm Gammopathy Lymphoplasmacytic Lymphoma

Related Agents

Pre-clinical Phase

Pre-clinical Phase

Bioactive Molecules (4)

Cat. No.	Product Name	Effect	Purity	Rare Diseases
HY-RS14068	SYCE1 Human Pre-designed siRNA Set A	Pre-designed Set	/	Unkown
HY-RS16403	SYCE1L Human Pre-designed siRNA Set A	Pre-designed Set	/	Unkown
HY-RS21203	Syce1l Mouse Pre-designed siRNA Set A	Pre-designed Set	/	Unkown
HY-RS27719	Syce1l Rat Pre-designed siRNA Set A	Pre-designed Set	/	Unkown

Orthologs Information

Species	Symbol	Source	ID
Bos taurus	SYCE1	VGNC	VGNC:35504
Rattus norvegicus	SYCE1	RGD	RGD:1559853
Felis catus	SYCE1	VGNC	VGNC:97651
Canis familiaris	SYCE1	VGNC	VGNC:47014
Mus musculus	SYCE1	MGD	MGI:1921325
Others	SYCE1	NCBI