KDM4C - lysine demethylase 4C Gene
Also Known as GASC1; JHDM3C; JMJD2C; TDRD14C
Species: Homo sapiens
About KDM4C
This gene has 15 transcripts (splice variants), 304 orthologues and 10 paralogues. Ubiquitous expression in lymph node (RPKM 3.4), bone marrow (RPKM 3.3) and 25 other tissues.
Summary
This gene is a member of the Jumonji domain 2 (JMJD2) family. The encoded protein is a trimethylation-specific demethylase, and converts specific trimethylated histone residues to the dimethylated form. This enzymatic action regulates gene expression and chromosome segregation. Chromosomal aberrations and changes in expression of this gene may be found in tumor cells. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2015]
KDM4C Products (11)
| mRNA | Protein | Name |
|---|---|---|
| NM_001146695.4 | NP_001140167.1 | lysine-specific demethylase 4C isoform 3 |
| NM_001146696.2 | NP_001140168.1 | lysine-specific demethylase 4C isoform 4 |
| NM_001304339.4 | NP_001291268.1 | lysine-specific demethylase 4C isoform 5 |
| NM_001304340.4 | NP_001291269.1 | lysine-specific demethylase 4C isoform 6 |
| NM_001304341.4 | NP_001291270.1 | lysine-specific demethylase 4C isoform 7 |
| NM_001353997.3 | NP_001340926.1 | lysine-specific demethylase 4C isoform 8 |
| NM_001353998.3 | NP_001340927.1 | lysine-specific demethylase 4C isoform 9 |
| NM_001353999.3 | NP_001340928.1 | lysine-specific demethylase 4C isoform 10 |
| NM_001354000.3 | NP_001340929.1 | lysine-specific demethylase 4C isoform 11 |
| NM_001354001.3 | NP_001340930.1 | lysine-specific demethylase 4C isoform 11 |
| NM_015061.6 | NP_055876.2 | lysine-specific demethylase 4C isoform 1 |
| Molecular Function GO Annotation | Evidence | Verweise | Source |
|---|---|---|---|
| enables enzyme binding |
IPI
IPI: Inferred from physical interaction
|
17277772 | GOA |
| enables histone H3K36 demethylase activity |
IDA
IDA: Inferred from direct assay
|
21914792 | GOA |
| enables histone H3K9 demethylase activity |
IDA
IDA: Inferred from direct assay
|
18066052 | GOA |
| enables histone H3K9 demethylase activity |
IMP
IMP: Inferred from mutant phenotype
|
28262558 | GOA |
| enables histone H3K9me2/H3K9me3 demethylase activity |
IDA
IDA: Inferred from direct assay
|
21914792 | GOA |
| contributes to histone H3K9me2/H3K9me3 demethylase activity |
IMP
IMP: Inferred from mutant phenotype
|
17277772 | GOA |
| enables histone demethylase activity |
EXP
EXP: Inferred from Experiment
|
18066052 | GOA |
| enables nuclear androgen receptor binding |
IPI
IPI: Inferred from physical interaction
|
17277772 | GOA |
| enables nuclear receptor coactivator activity |
IGI
IGI: Inferred from genetic interaction
|
17277772 | GOA |
| enables zinc ion binding |
IDA
IDA: Inferred from direct assay
|
21914792 | GOA |
| Biological Process GO Annotation | Evidence | Verweise | Source |
|---|---|---|---|
| involved in androgen receptor signaling pathway |
IDA
IDA: Inferred from direct assay
|
17277772 | GOA |
| involved in positive regulation of cell population proliferation |
IMP
IMP: Inferred from mutant phenotype
|
17277772 | GOA |
| involved in positive regulation of transcription by RNA polymerase II |
IDA
IDA: Inferred from direct assay
|
17277772 | GOA |
| Cellular Component GO Annotation | Evidence | Verweise | Source |
|---|---|---|---|
| located in chromatin |
IDA
IDA: Inferred from direct assay
|
17277772 | GOA |
KDM4C Protein Structure
JmjN: jmjN domain (17 - 51)
JmjC: JmjC domain, hydroxylase (177 - 293)
PHD_2: PHD-finger (712 - 747)
zf-HC5HC2H_2: PHD-zinc-finger like domain (753 - 864)
- 0
- 200
- 400
- 600
- 800
- 1000
- 1056 a.a.
| Protein Preferred Names | Protein Names | |
|---|---|---|
|
lysine-specific demethylase 4C |
|
Related Diseases
| Diseases | Alias | |
|---|---|---|
| Primary Mediastinal B-Cell Lymphoma |
|
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| Lung Sarcomatoid Carcinoma |
|
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| Infratentorial Cancer |
|
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| Spermatogenic Failure 8 |
|
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| Adult Medulloblastoma |
|
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| Sarcomatoid Squamous Cell Skin Carcinoma |
|
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| Hyperoxaluria, Primary, Type I |
|
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| Hodgkin'S Lymphoma, Nodular Sclerosis |
|
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| Idh-Mutant Anaplastic Astrocytoma |
|
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| Nasal Type Extranodal Nk/T-Cell Lymphoma |
|
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| Marginal Zone B-Cell Lymphoma |
|
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| Primary Hyperoxaluria |
|
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| Sotos Syndrome 3 |
|
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| D-2-Hydroxyglutaric Aciduria 1 |
|
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| Ornithosis |
|
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| L-2-Hydroxyglutaric Aciduria |
|
|
| Facioscapulohumeral Muscular Dystrophy 2, Digenic |
|
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| Fetal Alcohol Spectrum Disorder |
|
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| Squamous Cell Carcinoma |
|
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| Central Nervous System Cancer |
|
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| 2-Hydroxyglutaric Aciduria |
|
|
| Syndromic X-Linked Intellectual Disability Claes-Jensen Type |
|
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| Male Reproductive Organ Cancer |
|
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| Male Reproductive System Disease |
|
|
| X-Linked Intellectual Disability-Psychosis-Macroorchidism Syndrome |
|
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| Composite Lymphoma |
|
|
| Brachydactyly, Type E1 |
|
|
| Laurin-Sandrow Syndrome |
|
|
| Kabuki Syndrome 1 |
|
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| Bone Marrow Cancer |
|
|
| Orofaciodigital Syndrome Viii |
|
|
| Specific Developmental Disorder |
|
|
| Mature T-Cell And Nk-Cell Lymphoma |
|
|
| Nephronophthisis 4 |
|
|
| Facioscapulohumeral Muscular Dystrophy 1 |
|
|
| Retinal Cancer |
|
|
| Chromosome 16p13.3 Deletion Syndrome, Proximal |
|
|
| Esophageal Disease |
|
|
| Combined D-2- And L-2-Hydroxyglutaric Aciduria |
|
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| Thoracic Cancer |
|
|
| Lymphatic System Cancer |
|
|
| Sotos Syndrome 2 |
|
|
| Lymphatic System Disease |
|
|
| White-Sutton Syndrome |
|
|
| Serine Deficiency |
|
|
| Kleefstra Syndrome |
|
|
| Autonomic Nervous System Neoplasm |
|
|
| Peripheral Nervous System Neoplasm |
|
|
| Digenic Disease |
|
|
| Central Nervous System Benign Neoplasm |
|
|
| Angioimmunoblastic T-Cell Lymphoma |
|
|
| Brain Stem Cancer |
|
|
| Connective Tissue Cancer |
|
|
| Diffuse Astrocytoma |
|
|
| Multiple Enchondromatosis, Maffucci Type |
|
|
| Retinitis Pigmentosa 1 |
|
|
| Low Grade Glioma |
|
|
| Leukocyte Disease |
|
|
| Acute Erythroid Leukemia |
|
|
| Malignant Astrocytoma |
|
|
| Spinal Disease |
|
|
| Syndromic X-Linked Intellectual Disability Siderius Type |
|
|
| Sotos Syndrome 1 |
|
|
| Autoimmune Vasculitis |
|
|
| Disease Of Mental Health |
|
|
| Polycythemia Vera |
|
|
| Melanoma In Congenital Melanocytic Nevus |
|
|
| Reproductive System Disease |
|
|
| Estrogen-Receptor Positive Breast Cancer |
|
|
| Lymphoma, Mucosa-Associated Lymphoid Type |
|
|
| Bone Sarcoma |
|
|
| Bardet-Biedl Syndrome 3 |
|
|
| Ocular Cancer |
|
|
| Prostate Disease |
|
|
| Weaver Syndrome |
|
|
| Intrahepatic Cholangiocarcinoma |
|
|
| Immune System Disease |
|
|
| Retinitis Pigmentosa 11 |
|
|
| Adult T-Cell Leukemia/Lymphoma |
|
|
| Spinal Cord Disease |
|
|
| Esophageal Cancer |
|
|
| Fetal Alcohol Syndrome |
|
|
| Enchondromatosis, Multiple, Ollier Type |
|
|
| Brain Stem Glioma |
|
|
| Bone Cancer |
|
|
| Skin Carcinoma |
|
|
| Chondroblastoma |
|
|
| Retinal Disease |
|
|
| Skin Squamous Cell Carcinoma |
|
|
| Pervasive Developmental Disorder |
|
|
| Breast Disease |
|
|
| Gliomatosis Cerebri |
|
|
| Nodal Marginal Zone Lymphoma |
|
|
| Childhood Medulloblastoma |
|
|
| Hematologic Cancer |
|
|
| Gray Zone Lymphoma |
|
|
| Sensory System Disease |
|
|
| Autism Spectrum Disorder |
|
|
| Basal Cell Nevus Syndrome |
|
|
| Mature B-Cell Neoplasm |
|
|
| Brain Glioma |
|
|
| Renal Cell Carcinoma, Nonpapillary |
|
|
| Germ Cell Cancer |
|
|
| Carbohydrate Metabolic Disorder |
|
|
| Leiomyomatosis |
|
|
| Renal Cell Carcinoma, Papillary, 1 |
|
|
| Bile Duct Adenocarcinoma |
|
|
| Colonic Disease |
|
|
| Inherited Metabolic Disorder |
|
|
| Suppression Of Tumorigenicity 12 |
|
|
| Chromosomal Disease |
|
|
| Chronic Leukemia |
|
|
| Brain Cancer |
|
|
| Potocki-Lupski Syndrome |
|
|
| Central Nervous System Disease |
|
|
| Chromosomal Duplication Syndrome |
|
|
| Lymphoma, Non-Hodgkin, Familial |
|
|
| Mantle Cell Lymphoma |
|
|
| Urinary System Disease |
|
|
| Lymphoma, Hodgkin, Classic |
|
|
| Cardiomyopathy, Dilated, 1e |
|
|
| Cartilage-Hair Hypoplasia |
|
|
| Peripheral T-Cell Lymphoma |
|
|
| Rhabdoid Cancer |
|
|
| Ganglioneuroblastoma |
|
|
| Bladder Disease |
|
|
| Cell Type Benign Neoplasm |
|
|
| Central Nervous System Hematologic Cancer |
|
|
| Central Nervous System Lymphoma |
|
|
| Peripheral Nervous System Disease |
|
|
| Endocrine Organ Benign Neoplasm |
|
|
| Muscular Disease |
|
|
| Anaplastic Oligodendroglioma |
|
|
| Primary Cutaneous T-Cell Non-Hodgkin Lymphoma |
|
|
| Diffuse Large B-Cell Lymphoma |
|
|
| Malignant Exocrine Pancreas Neoplasm |
|
|
| Meier-Gorlin Syndrome 1 |
|
|
| Nut Midline Carcinoma |
|
|
| Colorectal Cancer |
|
|
| Germ Cell And Embryonal Cancer |
|
|
| Physical Disorder |
|
|
| Large Intestine Cancer |
|
|
| Respiratory System Cancer |
|
|
| Chronic Myelomonocytic Leukemia |
|
|
| Intestinal Disease |
|
|
| Gastrointestinal System Cancer |
|
|
| Bile Duct Disease |
|
|
| Chromosomal Deletion Syndrome |
|
|
| Bipolar Disorder |
|
|
| Leukemia, Acute Myeloid |
|
|
| Lung Cancer |
|
|
| Anaplastic Astrocytoma |
|
|
| Autism |
|
|
| Alcohol Use Disorder |
|
|
| Biliary Tract Disease |
|
|
| Amino Acid Metabolic Disorder |
|
|
| Biliary Tract Cancer |
|
|
| Gastrointestinal System Disease |
|
|
| Childhood Leukemia |
|
|
| Testicular Disease |
|
|
| Respiratory System Disease |
|
|
| Acute Biphenotypic Leukemia |
|
|
| Endocrine System Disease |
|
|
| Myeloproliferative Neoplasm |
|
|
| Skin Melanoma |
|
|
| Muscle Tissue Disease |
|
|
| Integumentary System Disease |
|
|
| Nervous System Disease |
|
|
| Prostate Cancer |
|
|
| High Grade Glioma |
|
|
| Connective Tissue Disease |
|
|
| Pancreatic Ductal Adenocarcinoma |
|
|
| Eye Disease |
|
|
| Psychotic Disorder |
|
|
| Treacher Collins Syndrome 1 |
|
|
| Acquired Metabolic Disease |
|
|
| Atrial Heart Septal Defect |
|
|
| Melanoma, Uveal |
|
|
| Leukemia, Acute Lymphoblastic |
|
|
| Beckwith-Wiedemann Syndrome |
|
|
| Head And Neck Cancer |
|
|
| Li-Fraumeni Syndrome |
|
|
| Cerebellar Disease |
|
|
| T-Cell Acute Lymphoblastic Leukemia |
|
|
| Myelodysplastic Syndrome |
|
|
| Ewing Sarcoma |
|
|
| Testicular Cancer |
|
|
| Acute Promyelocytic Leukemia |
|
|
| Myeloma, Multiple |
|
|
| Breast Cancer |
|
|
| Orofacial Cleft |
|
|
| Skin Disease |
|
|
| Leukemia, Chronic Myeloid |
|
|
| Wilms Tumor 1 |
|
|
| Body Mass Index Quantitative Trait Locus 11 |
|
|
| Myopathy |
|
|
| Leukemia, Chronic Lymphocytic |
|
|
| Retinitis Pigmentosa |
|
|
| Congenital Nervous System Abnormality |
|
Orthologs Information
| Species | Symbol | Source | ID |
|---|---|---|---|
| Macaca mulatta | KDM4C | VGNC | VGNC:73843 |
| Bos taurus | KDM4C | VGNC | VGNC:30529 |
| Rattus norvegicus | KDM4C | RGD | RGD:1307528 |
| Felis catus | KDM4C | VGNC | VGNC:97473 |
| Canis familiaris | KDM4C | VGNC | VGNC:42326 |
| Mus musculus | KDM4C | MGD | MGI:1924054 |
| Others | KDM4C | NCBI |