Comprehensive network map of interferon gamma signaling

  • J Cell Commun Signal. 2018 Dec;12(4):745-751. doi: 10.1007/s12079-018-0486-y.
Mohd Younis Bhat  1  2 Hitendra S Solanki  1  3 Jayshree Advani  1  4 Aafaque Ahmad Khan  1  3 T S Keshava Prasad  1  5 Harsha Gowda  1 Saravanan Thiyagarajan  6 Aditi Chatterjee  7
Affiliations
  • 1. Institute of Bioinformatics, International Technology Park, Bangalore, 560 066, India.
  • 2. School of Biotechnology, Amrita Vishwa Vidyapeetham, Kollam, 690525, India.
  • 3. School of Biotechnology, Kalinga Institute of Industrial Technology, Bhubaneswar, 751024, India.
  • 4. Manipal Academy of Higher Education, Manipal, 576104, India.
  • 5. Center for Systems Biology and Molecular Medicine, Yenepoya Research Centre, Yenepoya (Deemed to be University), Mangalore, 575018, India.
  • 6. Division of Cancer Biology, Mitra Biotech, Bangalore, 560099, India.
  • 7. Institute of Bioinformatics, International Technology Park, Bangalore, 560 066, India. [email protected].
Abstract

Interferon gamma (IFN-γ), is a cytokine, which is an important regulator of host defense system by mediating both innate and adaptive immune responses. IFN-γ signaling is primarily associated with inflammation and cell-mediated immune responses. IFN-γ is also represented as antitumor cytokine which facilitates immunosurveillance in tumor cells. In addition, IFN-γ mediated signaling also elicits pro-tumorigenic transformations and promotes tumor progression. Impact of IFN-γ signaling in mammalian cells has been widely studied which indicate that IFN-γ orchestrates distinct cellular functions including Immunomodulation, leukocyte trafficking, Apoptosis, anti-microbial, and both anti- and pro-tumorigenic role. However, a detailed network of IFN-γ signaling pathway is currently lacking. Therefore, we systematically curated the literature information pertaining to IFN-γ signaling and develop a comprehensive signaling network to facilitate better understanding of IFN-γ mediated signaling. A total of 124 proteins were catalogued that were experimentally proven to be involved in IFN-γ signaling cascade. These 124 proteins were found to participate in 81 protein-protein interactions, 94 post-translational modifications, 20 translocation events, 54 activation/inhibiton reactions. Further, 236 differential expressed genes were also documented in IFN-γ mediated signaling. IFN-γ signaling pathway is made freely available to scientific audience through NetPath at ( http://www.netpath.org/pathways?path_id=NetPath_32 ). We believe that documentation of reactions pertaining to IFN-γ signaling and development of pathway map will facilitate further research in IFN-γ associated human diseases including Cancer.

Keywords
Interferon gamma receptor; Interferon response factors; Interferon-gamma activated sequence and PathVisio; Signal transducer and activator of transcription.