HDAC-IN-101
HDAC-IN-101 is a HDAC1 inhibitor and nitroreductase/pH-activated fluorescent inducer, with an IC50 of 65 nM against human HDAC1. HDAC-IN-101 blocks cancer cell proliferation by inhibiting HDAC1. HDAC-IN-101 is reduced by overexpressed nitroreductase to generate H6AQ (Ex/Em = 450 nm/500 nm), a product that emits fluorescence under low pH conditions. HDAC-IN-101 is applicable for cancer-related research.
For research use only. We do not sell to patients.
- CAS No.: 1616863-09-2
- Formula: C25H19N5O4
- Molecular Weight:453.45
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Storage:
Please store the product under the recommended conditions in the Certificate of Analysis.
Biological Activity
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Cell Line
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Type | Value | Description | References |
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| HCT-116 | IC50 |
1.41 μM
Compound: 12h
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Antiproliferative activity against human HCT116 cells after 48 hrs by MTT assay
Antiproliferative activity against human HCT116 cells after 48 hrs by MTT assay
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[PMID: 29288941] |
Guidelines (The following are our recommended protocols; this is a guideline and should be modified according to your specific needs).
1. Stock Solution Preparation
1.1 Solvent: For most dyes, organic solvents such as anhydrous DMSO are typically used for dissolution.
1.2 Concentration Recommendation: Generally, a high concentration of 1-10 mM stock solution is recommended.
1.3 Storage Conditions: Store at -20 ℃ or -80 ℃ protected from light and avoid repeated freeze-thaw cycles.
2. Working Solution Preparation
2.1 Diluent: Serum-free culture medium or PBS is typically used. Proteins and esterases in serum may interfere with staining or cause dye hydrolysis.
2.2 Working Concentration: 1-10 μM
Note: Please adjust the dye working solution concentration according to your actual situation and prepare fresh before use.
3. Cell Staining
3.1 Culture cells on sterile coverslips.
3.2 Remove the coverslips from the culture medium and aspirate excess medium.
3.3 Add working solution, gently shake to completely cover the cells, and incubate at 37 ℃ for 2-6 h.
3.4 Aspirate the dye working solution, wash 2-3 times with culture medium, 5 minutes each time, and observe using a fluorescence microscope or flow cytometry.
Note: If flow cytometry is required, the cells should be resuspended with trypsin before staining.
HDAC-IN-101 (Compound H6M) potently inhibits purified HDAC1 enzyme with an IC50 of 65 nM[1].
HDAC-IN-101 (72 h) inhibits the proliferation of HeLa, HepG2, HCT116, and H1299 cancer cells with IC50 values of 3.59, 3.55, 3.23, and 2.57 μM, respectively, and shows lower cytotoxicity to normal LO2 cells with an IC50 of 12.98 μM following 72 h of incubation[1].
HDAC-IN-101 (5 μM) is pH independent, displaying minimal fluorescence intensity across pH 4.33 to 7.40 at a concentration of 5 μM when excited at 450 nm[1].
HDAC-IN-101 (5 μM; 0-6 h) is activated by 10 μg/mL NTR and 500 μM NADH at pH 4.00, showing time-dependent fluorescence enhancement at 500 nm over 6 h of incubation[1].
HDAC-IN-101 (H6M) shows high selectivity for NTR and low pH (4.00), exhibiting significant fluorescence enhancement at 500 nm only when treated with 10 μg/mL NTR and 500 μM NADH at pH 4.00[1].
HDAC-IN-101 (1 μM; 0-4 h) selectively activates fluorescence in HeLa cells with high NTR expression, showing time-dependent enhancement over 4 h of incubation, while displaying minimal fluorescence in LO2 cells[1].
MedChemExpress (MCE) has not independently confirmed the accuracy of these methods. They are for reference only.
MedChemExpress (MCE) has not independently confirmed the accuracy of these methods. They are for reference only.
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Animal Model:BALB/c nude (female, 6 weeks old)[1]
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Dosage:40 mg/kg
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Administration:i.v.; single dose
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Result:Detected bright fluorescence specifically at the tumor site, with minimal signal at non-target sites.
Confirmed significantly more intense fluorescent signal in tumors than in major organs, with a tumor-to-normal tissue ratio ranging from 3.17 to 12.09.
Enabled clear identification of tumor margins to guide successful tumor resection.
Chemical Information
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CAS No. 1616863-09-2
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Molecular Weight 453.45
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Formula C25H19N5O4
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SMILES
O=C(C1=CC=C(C=C1)CNC2=CC3=C(C(C4=CC=C(C=C4)[N+]([O-])=O)=N2)NC5=C3C=CC=C5)NO
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Shipping
Room temperature in continental US; may vary elsewhere.
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Storage
Please store the product under the recommended conditions in the Certificate of Analysis.
Purity & Documentation
References
Calculators
Concentration (start) × Volume (start) = Concentration (final) × Volume (final)