Loss-of-function mutations in UDP-Glucose 6-Dehydrogenase cause recessive developmental epileptic encephalopathy

  • Nat Commun. 2020 Jan 30;11(1):595. doi: 10.1038/s41467-020-14360-7.
Holger Hengel  #  1  2 Célia Bosso-Lefèvre  #  3  4 George Grady  5 Emmanuelle Szenker-Ravi  3 Hankun Li  6 Sarah Pierce  7 Élise Lebigot  8 Thong-Teck Tan  9 Michelle Y Eio  9 Gunaseelan Narayanan  9 Kagistia Hana Utami  10 Monica Yau  11 Nader Handal  12 Werner Deigendesch  12 Reinhard Keimer  13 Hiyam M Marzouqa  12 Meral Gunay-Aygun  14 Michael J Muriello  14 Helene Verhelst  15 Sarah Weckhuysen  16  17  18 Sonal Mahida  19 Sakkubai Naidu  19 Terrence G Thomas  20 Jiin Ying Lim  21  22  23 Ee Shien Tan  21  22  23 Damien Haye  24 Michèl A A P Willemsen  25 Renske Oegema  26 Wendy G Mitchell  27 Tyler Mark Pierson  28 Marisa V Andrews  29 Marcia C Willing  29 Lance H Rodan  30 Tahsin Stefan Barakat  31 Marjon van Slegtenhorst  31 Ralitza H Gavrilova  32 Diego Martinelli  33 Tal Gilboa  34 Abdullah M Tamim  35 Mais O Hashem  36 Moeenaldeen D AlSayed  37 Maha M Abdulrahim  37 Mohammed Al-Owain  37 Ali Awaji  38 Adel A H Mahmoud  39 Eissa A Faqeih  40 Ali Al Asmari  40 Sulwan M Algain  41 Lamyaa A Jad  39 Hesham M Aldhalaan  42 Ingo Helbig  43 David A Koolen  44 Angelika Riess  45 Ingeborg Kraegeloh-Mann  46 Peter Bauer  45 Suleyman Gulsuner  7 Hannah Stamberger  16  17  18 Alvin Yu Jin Ng  47 Sha Tang  48 Sumanty Tohari  47 Boris Keren  49 Laura E Schultz-Rogers  32 Eric W Klee  32 Sabina Barresi  33 Marco Tartaglia  33 Hagar Mor-Shaked  50 Sateesh Maddirevula  36 Amber Begtrup  51 Aida Telegrafi  51 Rolph Pfundt  44 Rebecca Schüle  1  2 Brian Ciruna  11 Carine Bonnard  3 Mahmoud A Pouladi  10  52  53 James C Stewart  47 Adam Claridge-Chang  47  54 Dirk J Lefeber  55  56 Fowzan S Alkuraya  36 Ajay S Mathuru  6  47 Byrappa Venkatesh  4  47 Joseph J Barycki  5 Melanie A Simpson  5 Saumya S Jamuar  21  22  23  57 Ludger Schöls  58  59 Bruno Reversade  60  61  62  63  64
Affiliations
  • 1. Department of Neurology and Hertie-Institute for Clinical Brain Research, University of Tübingen, Tübingen, Germany.
  • 2. German Center of Neurodegenerative Diseases (DZNE), Tübingen, Germany.
  • 3. Institute of Medical Biology, A*STAR, Biopolis, Singapore, 138648, Singapore.
  • 4. National University of Singapore, Department of Paediatrics, Yong Loo Lin School of Medicine, Biopolis, Singapore, Singapore.
  • 5. Department of Molecular and Structural Biochemistry North Carolina State University, Raleigh, NC, 27607, USA.
  • 6. Yale-NUS College, 12 College Avenue West, Biopolis, Singapore, Singapore.
  • 7. Division of Medical Genetics, Department of Medicine, University of Washington, Seattle, WA, USA.
  • 8. Service De Biochimie, Hopital Bicêtre, Assistance publique-Hôpitaux de Paris, 78 avenue du general leclerc, Le Kremlin Bicêtre, France.
  • 9. Institute of Medical Biology, Singapore Stem Cell Bank, A∗STAR, Biopolis, Singapore, 138648, Singapore.
  • 10. Translational Laboratory in Genetic Medicine, Agency for Science, Technology, and Research, Singapore (A*STAR), 8A Biomedical Grove, Immunos, Level 5, Singapore, 138648, Singapore.
  • 11. Program in Developmental & Stem Cell Biology, The Hospital for Sick Children, Department of Molecular Genetics, The University of Toronto, Toronto, ON, Canada.
  • 12. Caritas Baby Hospital Bethlehem, Bethlehem, State of Palestine.
  • 13. Ped Neurology, Staufer Hospital, Wetzgauer Straße 85, Schwäbisch-Gmünd, Germany.
  • 14. McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, 21205, USA.
  • 15. Department of Paediatric Neurology, Ghent University Hospital, Ghent, Belgium.
  • 16. Center for Molecular Neurology, VIB, Antwerp, Belgium.
  • 17. Laboratory of Neurogenetics, Institute Born-Bunge, University of Antwerp, Antwerp, Belgium.
  • 18. Department of Neurology, University Hospital Antwerp, Antwerp, Belgium.
  • 19. Division of Neurology and Neurogenetics, Kennedy Krieger Institute, Baltimore, MD, USA.
  • 20. Neurology Service, Department of Paediatrics, KK Women's and Children's Hospital, Singapore, Singapore.
  • 21. Genetics Service, Department of Paediatrics, KK Women's and Children's Hospital, Singapore, Singapore.
  • 22. Paediatric Academic Clinical Programme, Duke-NUS Medical School, Singapore, Singapore.
  • 23. SingHealth Duke-NUS Genomic Medicine Centre, Singapore, Singapore.
  • 24. Service de Génétique Médicale, CHU De Nice Hôpital de l'Archet 2, 151 route Saint Antoine de la Ginestière, CS 23079 062002, Nice, Cedex 3, France.
  • 25. Department of Pediatric Neurology, Radboud University Medical Center, Nijmegen, The Netherlands.
  • 26. Department of Genetics, University Medical Center Utrecht, Utrecht, The Netherlands.
  • 27. Neurology Division, Childrens Hospital Los Angeles & Department of Neurology, Keck School of Medicine of University of Southern California, Los Angeles, CA, 90033, USA.
  • 28. Department of Pediatrics, Department of Neurology, & the Board of Governors Regenerative Medicine Institute, Cedars-Sinai Medical Center, Los Angeles, CA, USA.
  • 29. Division of Genetics and Genomic Medicine, Department of Pediatrics, Washington University School of Medicine, St. Louis, MO, USA.
  • 30. Division of Genetics and Genomics and Department of Neurology, Boston Children's Hospital, Boston, MA, USA.
  • 31. Department of Clinical Genetics, Erasmus MC, University Medical Center, Wytemaweg 80, 3015 CN, Rotterdam, The Netherlands.
  • 32. Department of Clinical Genomics, Mayo Clinic, 200 First Street SW, Rochester, MN, USA.
  • 33. Genetics and Rare Diseases Research Division, Ospedale Pediatrico Bambino Gesù, IRCCS, viale San Paolo 15, 00146, Rome, Italy.
  • 34. Child Neurology Unit, Hadassah-Hebrew University Medical Center, 9112001, Jerusalem, Israel.
  • 35. Pediatric Neurology, King Faisal Specialist Hospital and Research Center, Riyadh, Saudi Arabia.
  • 36. Department of Genetics, King Faisal Specialist Hospital and Research Center, Riyadh, Saudi Arabia.
  • 37. Department of Medical Genetics, King Faisal Specialist Hospital and Research Center, Riyadh, Saudi Arabia.
  • 38. Department of Pediatrics, King Fahad Central Hospital in Jizan, Abu Arish, Saudi Arabia.
  • 39. Pediatric Neurology Department, National Neuroscience Institute, King Fahad Medical City, Riyadh, Saudi Arabia.
  • 40. Section of Medical Genetics, Children's Hospital, King Fahad Medical City, Riyadh, Saudi Arabia.
  • 41. General Pediatrics and Adolescents, King Fahad Medical City, Riyadh, Saudi Arabia.
  • 42. Neuroscience Department King Faisal Specialist Hospital and Research Center, Riyadh, Saudi Arabia.
  • 43. Division of Neurology, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.
  • 44. Department of Human Genetics, Radboud University Medical Center, Nijmegen, The Netherlands.
  • 45. Institute of Medical Genetics and Applied Genomics (Tübingen) and Centogene AG (Rostock), Rostock, Germany.
  • 46. Department of Pediatric Neurology, University of Tübingen, Tübingen, Germany.
  • 47. Institute of Molecular and Cell Biology, A*STAR, Biopolis, Singapore, 138673, Singapore.
  • 48. Division of Clinical Genomics, Ambry Genetics, Aliso Viejo, CA, USA.
  • 49. APHP, GH Pitié Salpêtrière, Department of Genetics, Unit of Development Genomics, Paris, France.
  • 50. Department of Genetic and Metabolic Diseases, Hadassah-Hebrew University Medical Center, 9112001, Jerusalem, Israel.
  • 51. GeneDx, 207 Perry Parkway, Gaithersburg, MD, 20877, USA.
  • 52. Department of Physiology, National University of Singapore, Singapore, 117597, Singapore.
  • 53. Department of Medicine, National University of Singapore, Singapore, 117597, Singapore.
  • 54. Program in Neuroscience and Behavioral Disorders, Duke-NUS Medical School, Singapore, Singapore.
  • 55. Department of Neurology, Donders Center for Brain, Cognition, and Behavior, Nijmegen, The Netherlands.
  • 56. Department of Laboratory Medicine, Translational Metabolic Laboratory, Nijmegen, The Netherlands.
  • 57. SingHealth Duke-NUS Institute of Precision Medicine, Singapore, Singapore.
  • 58. Department of Neurology and Hertie-Institute for Clinical Brain Research, University of Tübingen, Tübingen, Germany. [email protected].
  • 59. German Center of Neurodegenerative Diseases (DZNE), Tübingen, Germany. [email protected].
  • 60. Institute of Medical Biology, A*STAR, Biopolis, Singapore, 138648, Singapore. [email protected].
  • 61. National University of Singapore, Department of Paediatrics, Yong Loo Lin School of Medicine, Biopolis, Singapore, Singapore. [email protected].
  • 62. Institute of Molecular and Cell Biology, A*STAR, Biopolis, Singapore, 138673, Singapore. [email protected].
  • 63. Medical Genetics Department, Koç University School of Medicine, 34010, Istanbul, Turkey. [email protected].
  • 64. Reproductive Biology Laboratory, Obstetrics and Gynaecology, Academic Medical Center (AMC), Meibergdreef 9, 1105 AZ, Amsterdam-Zuidoost, The Netherlands. [email protected].
  • # Contributed equally.
Abstract

Developmental epileptic encephalopathies are devastating disorders characterized by intractable epileptic seizures and developmental delay. Here, we report an allelic series of germline recessive mutations in UGDH in 36 cases from 25 families presenting with epileptic encephalopathy with developmental delay and hypotonia. UGDH encodes an oxidoreductase that converts UDP-glucose to UDP-glucuronic acid, a key component of specific proteoglycans and glycolipids. Consistent with being loss-of-function alleles, we show using patients' primary fibroblasts and biochemical assays, that these mutations either impair UGDH stability, oligomerization, or enzymatic activity. In vitro, patient-derived cerebral organoids are smaller with a reduced number of proliferating neuronal progenitors while mutant ugdh zebrafish do not phenocopy the human disease. Our study defines UGDH as a key player for the production of extracellular matrix components that are essential for human brain development. Based on the incidence of variants observed, UGDH mutations are likely to be a frequent cause of recessive epileptic encephalopathy.