DCAF8 binds DDB1 via an N-terminal helix-loop-helix motif to assemble CRL4 and promote cell cycle progression

  • Cell Rep. 2026 Jun 23;45(6):117502. doi: 10.1016/j.celrep.2026.117502.
Miaomiao Shen  1 Hang Zhang  2 Min Chen  1 Jiaqi Yang  1 Zhiguang Yuchi  3 Huawei Zhang  4 Liren Liu  5
Affiliations
  • 1. Department of Molecular Pharmacology, Tianjin Medical University Cancer Institute & Hospital, National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin, Tianjin's Clinical Research Center for Cancer, Tianjin 300060, China.
  • 2. State Key Laboratory of Microbial Technology, Shandong University, Qingdao, China; Institute of Biomedicine and Biotechnology, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, 518055, China; Shandong Provincial Key Laboratory of Deep Sea Bioresources Exploration and Utilization, Shandong University, Qingdao 266237, China.
  • 3. Tianjin Key Laboratory for Modern Drug Delivery and High-Efficiency, Frontiers Science Center for Synthetic Biology, School of Pharmaceutical Science and Technology, Faculty of Medicine, Tianjin University, Tianjin, China.
  • 4. Institute of Biomedicine and Biotechnology, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, 518055, China. Electronic address: [email protected].
  • 5. Department of Molecular Pharmacology, Tianjin Medical University Cancer Institute & Hospital, National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin, Tianjin's Clinical Research Center for Cancer, Tianjin 300060, China. Electronic address: [email protected].
Abstract

Cullin-RING Ligase 4 (CRL4) complexes achieve substrate specificity through DDB1-CUL4-associated factors (DCAFs), yet how individual DCAFs engage the adaptor protein DDB1 remains incompletely understood. Here, we report the cryo-electron microscopy structure of DCAF8 in complex with DDB1 (2.53 Å) and define the molecular determinants underlying CRL4DCAF8 assembly and cell cycle progression. Our structure reveals that DCAF8 associates with DDB1 primarily through an N-terminal helix-loop-helix (HLH) motif that inserts into a conserved pocket formed by the BPA and BPC domains of DDB1. Disruption of this interface impairs complex assembly, attenuates CDC25A ubiquitination, and results in cell cycle defects. In contrast, residues within the conserved double DxR box of DCAF8 are positioned away from the DDB1 interface and are dispensable for adaptor binding. Together, these findings define a DCAF8-specific recruitment mechanism within CRL4 ubiquitin Ligase assemblies.

Keywords
CDC25A; CP: molecular biology; CRL4 ubiquitin ligase; DCAF8-DDB1 complex; cell cycle; cryo-EM.
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