PSPC1 - paraspeckle component 1 Gene
Also Known as PSP1
Species: Homo sapiens
About PSPC1
This gene has 8 transcripts (splice variants), 205 orthologues and 7 paralogues. Ubiquitous expression in testis (RPKM 5.7), bone marrow (RPKM 5.4) and 25 other tissues.
Summary
This gene encodes a nucleolar protein that localizes to punctate subnuclear structures that occur close to splicing speckles, known as paraspeckles. These paraspeckles are composed of RNA-protein structures that include a non-coding RNA, NEAT1/Men epsilon/beta, and the Drosophila Behavior Human Splicing family of proteins, which include the product of this gene and the P54NRB/NONO and PSF/SFPQ proteins. Paraspeckles may function in the control of gene expression via an RNA nuclear retention mechanism. The protein encoded by this gene is found in paraspeckles in transcriptionally active cells, but it localizes to unique cap structures at the nucleolar periphery when RNA polymerase II transcription is inhibited, or during telophase. Alternative splicing of this gene results in multiple transcript variants. A related pseudogene, which is also located on chromosome 13, has been identified. [provided by RefSeq, Aug 2011]
PSPC1 Products (4)
| mRNA | Protein | Name |
|---|---|---|
| NM_001042414.4 | NP_001035879.1 | paraspeckle component 1 isoform 1 |
| NM_001354908.2 | NP_001341837.1 | paraspeckle component 1 isoform 2 |
| NM_001354909.2 | NP_001341838.1 | paraspeckle component 1 isoform 1 |
| NM_001363660.2 | NP_001350589.1 | paraspeckle component 1 isoform 3 |
| Molecular Function GO Annotation | Evidence | Références | Source |
|---|---|---|---|
| enables RNA binding |
IDA
IDA: Inferred from direct assay
|
22416126 | GOA |
| enables protein binding |
IPI
IPI: Inferred from physical interaction
|
16148043 | GOA |
| Biological Process GO Annotation | Evidence | Références | Source |
|---|---|---|---|
| involved in activation of innate immune response |
IDA
IDA: Inferred from direct assay
|
28712728 | GOA |
| involved in non-membrane-bounded organelle assembly |
IDA
IDA: Inferred from direct assay
|
22416126 | GOA |
| Cellular Component GO Annotation | Evidence | Références | Source |
|---|---|---|---|
| is active in paraspeckles |
IDA
IDA: Inferred from direct assay
|
11790299 | GOA |
PSPC1 Protein Structure
RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (84 - 148)
RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (158 - 216)
NOPS: NOPS (NUC059) domain (229 - 280)
- 0
- 100
- 200
- 300
- 400
- 500
- 523 a.a.
| Protein Preferred Names | Protein Names | |
|---|---|---|
|
paraspeckle component 1 |
|
PSPC1 Protein-protein interaction Information
|
Type
|
Protein Name | Protein ID | Interactor | Interactor Species | Interactor ID | Detection Method | Références |
|---|---|---|---|---|---|---|---|
|
Intra
|
PSPC1 | Q8WXF1 | NONO | Homo sapiens | Q15233 | 16148043 | |
|
Intra
|
PSPC1 | Q8WXF1 | NONO | Homo sapiens | Q15233 | 25416956 | |
|
Intra
|
PSPC1 | Q8WXF1 | NONO | Homo sapiens | Q15233 | 16148043 | |
|
Intra
|
PSPC1 | Q8WXF1 | NONO | Homo sapiens | Q15233 | 35271311 | |
|
Intra
|
PSPC1 | Q8WXF1 | NONO | Homo sapiens | Q15233 | 25416956 | |
|
Intra
|
PSPC1 | Q8WXF1 | NONO | Homo sapiens | Q15233 | 25416956 | |
|
Intra
|
PSPC1 | Q8WXF1 | SFPQ | Homo sapiens | P23246 | 35271311 | |
|
Intra
|
PSPC1 | Q8WXF1 | KRT31 | Homo sapiens | Q15323 | 25416956 | |
|
Intra
|
PSPC1 | Q8WXF1 | KRT31 | Homo sapiens | Q15323 | 25416956 |
Orthologs Information
| Species | Symbol | Source | ID |
|---|---|---|---|
| Rattus norvegicus | PSPC1 | RGD | RGD:1310122 |
| Mus musculus | PSPC1 | MGD | MGI:1913895 |
| Felis catus | PSPC1 | VGNC | VGNC:64417 |
| Bos taurus | PSPC1 | VGNC | VGNC:33482 |
| Macaca mulatta | PSPC1 | VGNC | VGNC:76293 |
| Others | PSPC1 | NCBI |