Development of Pyridazinone Chemotypes Targeting the PDEδ Prenyl Binding Site

  • Chemistry. 2017 May 2;23(25):6083-6093. doi: 10.1002/chem.201603222.
Sandip Murarka  1 Pablo Martín-Gago  1 Carsten Schultz-Fademrecht  2 Alaa Al Saabi  2 Matthias Baumann  2 Eyad K Fansa  3 Shehab Ismail  4 Peter Nussbaumer  2 Alfred Wittinghofer  3 Herbert Waldmann  1  5
Affiliations
  • 1. Max-Planck-Institut für Molekulare Physiologie, Abteilung Chemische Biologie, Otto-Hahn-Straße 11, 44227, Dortmund, Germany.
  • 2. Lead Discovery Center GmbH, 44227, Dortmund, Germany.
  • 3. Max-Planck-Institut für Molekulare Physiologie, Structural Biology Group, 44227, Dortmund, Germany.
  • 4. Beatson Institute for Cancer Research, Bearsden, Glasgow, G61 1BD, UK.
  • 5. Technische Universität Dortmund, Fakultät Chemie, Chemische Biologie, Otto-Hahn-Straße 6, 44221, Dortmund, Germany.
Abstract

The K-Ras GTPase is a major target in Anticancer drug discovery. However, direct interference with signaling by K-Ras has not led to clinically useful drugs yet. Correct localization and signaling by farnesylated K-Ras is regulated by the prenyl binding protein PDEδ. Interfering with binding of PDEδ to K-Ras by means of small molecules provides a novel opportunity to suppress oncogenic signaling. Here we describe the identification and structure-guided development of novel K-Ras-PDEδ inhibitor chemotypes based on pyrrolopyridazinones and pyrazolopyridazinones that bind to the farnesyl binding pocket of PDEδ with low nanomolar affinity. We delineate the structure-property relationship and in vivo pharmacokinetic (PK) and toxicokinetic (Tox) studies for pyrazolopyridazinone-based K-Ras-PDEδ inhibitors. These findings may inspire novel drug discovery efforts aimed at the development of drugs targeting oncogenic Ras.

Keywords
PDEδ; k-ras; small molecules; structure-based design; structure-property relationships.
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