Thermo-sensitive tasiRNA biogenesis integrates temperature signals to maintain spikelet patterning in rice

  • New Phytol. 2026 Jun;250(6):3812-3827. doi: 10.1111/nph.71199.
Yuhan Zhang  1 ,  Yubo Wang  1 ,  Yuqing Liu  1 ,  Runjia Zhang  1 ,  Shilong Xu  2  3 ,  Fei Shang  1 ,  Zhiming Fang  1 ,  Yu Pan  1 ,  Shanshan Zhao  4 ,  Yuanzhu Yang  2  3 ,  Jianguo Wu  4 ,  Moussa Benhamed  5 ,  Ming Zhou  1
Affiliations
  • 1. State Key Laboratory of Plant Environmental Resilience, College of Life Sciences, Zhejiang University, Hangzhou, 310058, China.
  • 2. College of Agronomy, Hunan Agricultural University, Changsha, 410128, China.
  • 3. Key Laboratory of Southern Rice Innovation & Improvement, Ministry of Agriculture and Rural Affairs/Hunan Engineering Laboratory of Disease and Pest Resistant Rice Breeding, Yuan Longping High-Tech Agriculture Co., Ltd, Changsha, 410001, China.
  • 4. State Key Laboratory for Agricultural and Forestry Biosecurity, College of Plant Protection, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
  • 5. Université Paris-Saclay, CNRS, INRAE, Univ Evry, Institute of Plant Sciences Paris-Saclay (IPS2), Orsay, 91405, France.
Abstract

Rising temperatures threaten crop yields by disrupting panicle and spikelet development, yet the molecular sensors of thermal stress remain unknown. Through a field-based ethyl methanesulfonate (EMS) screen, we identified two rice mutants, tspd2 and tspd3, that show dramatic temperature-sensitive defects in spikelet polarity. Genetic mapping revealed lesions in two core small RNA (sRNA) factors: a weak OsDCL4 allele in tspd2 and a splice-site mutation in OsDRB4 in tspd3. We show that OsDRB4 is a dual-localized dsRNA-binding protein that directly binds TAS3 precursor RNAs and forms a functional complex with OsDCL4 to produce 21-nt phasiRNAs. Loss of OsDRB4 causes a temperature-exacerbated collapse of 21-nt phasiRNAs, including TAS3-derived tasiRNAs, leading to heat-induced derepression of OsARF3 genes. Strikingly, knockout of OsARF3 largely restores normal spikelet morphology, demonstrating that OsARF3 dysregulation is the proximal cause of thermo-sensitive spikelet defects. Our findings uncover a previously hidden mechanism in which an OsDCL4-OsDRB4-tasiRNA-OsARF3 axis buffers spikelet development against temperature fluctuations. This work establishes sRNA biogenesis as a critical determinant of thermal resilience in rice reproduction, providing a molecular entry point for engineering climate-resilient crops.

Keywords
OsDCL4‐OsDRB4‐tasiRNA‐OsARF3 axis; double‐stranded RNA‐binding protein; rice; spikelet patterning; thermo‐sensitive tasiRNAs.
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