Design, synthesis and structure-activity relationships of novel HIV capsid inhibitors with potent antiviral activities

  • Eur J Med Chem. 2025 Oct 5:295:117784. doi: 10.1016/j.ejmech.2025.117784.
Dazhou Shi  1 Shujing Xu  1 Lin Sun  1 Prem Prakash Sharma  2 Brijesh Rathi  2 Mei Wang  1 Linan Wu  1 Xiangyi Jiang  1 Erik De Clercq  3 Christophe Pannecouque  4 Xinyong Liu  5 Alexej Dick  6 Peng Zhan  7
Affiliations
  • 1. Department of Medicinal Chemistry, Key Laboratory of Chemical Biology (Ministry of Education), School of Pharmaceutical Sciences, Shandong University, 44 West Culture Road, 250012, Jinan, Shandong, PR China.
  • 2. Laboratory for Translational Chemistry and Drug Discovery, Department of Chemistry, Hansraj College, University of Delhi, Delhi, India.
  • 3. Rega Institute for Medical Research, Laboratory of Virology and Chemotherapy, K.U. Leuven, Herestraat 49 Postbus 1043 (09.A097), B-3000, Leuven, Belgium.
  • 4. Rega Institute for Medical Research, Laboratory of Virology and Chemotherapy, K.U. Leuven, Herestraat 49 Postbus 1043 (09.A097), B-3000, Leuven, Belgium. Electronic address: [email protected].
  • 5. Department of Medicinal Chemistry, Key Laboratory of Chemical Biology (Ministry of Education), School of Pharmaceutical Sciences, Shandong University, 44 West Culture Road, 250012, Jinan, Shandong, PR China. Electronic address: [email protected].
  • 6. Department of Biochemistry & Molecular Biology, Drexel University College of Medicine, Philadelphia, PA, 19102, USA.
  • 7. Department of Medicinal Chemistry, Key Laboratory of Chemical Biology (Ministry of Education), School of Pharmaceutical Sciences, Shandong University, 44 West Culture Road, 250012, Jinan, Shandong, PR China. Electronic address: [email protected].
Abstract

The HIV capsid (CA) protein is a highly promising target for anti-HIV treatment due to its critical role in viral replication. Based on the optimization of 11L guided by PF74, a series of novel HIV CA inhibitors targeting the NTD-CTD interface were identified, demonstrating potent inhibitory effects against both HIV-1 and HIV-2. Notably, compound IC-2b4 (EC50 = 0.08 ± 0.02 μM) exhibits twice the potency of 11L and three times that of PF74 against HIV-1. For HIV-2, IC-2a4 (EC50 = 0.01 ± 0.00 μM) demonstrates twice the efficacy of 11L and 221 times that of PF74. In mechanistic studies, IC-2b4 was shown to bind directly and stably to CA, exerting robust inhibitory effects during both the early and late stages of infection-a property also observed with IC-2b3. Molecular dynamics simulations revealed that IC-2b4 forms more extensive interactions with CA compared to PF74, thereby enhancing Antiviral activity. These novel Antiviral compounds collectively provide valuable insights into developing anti-HIV therapies and highlight the therapeutic potential of the CA protein as a drug target.

Keywords
Capsid inhibitor; HIV; NTD-CTD interface; Structure-activity relationships; Structure-based drug design.
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