BDL-E5
BDL-E5 is a fluorescent probe for detecting live induced pluripotent stem cells at the early reprogramming stage. Its detection mechanism involves specific binding to authentic reprogramming cells, which exhibit increased expression of pluripotency and epithelial genes and decreased expression of mesenchymal genes compared to non-reprogramming cells; it appears to co-localize more significantly with the Golgi complex than other organelle markers in reprogramming cells, and it does not require washing after staining to reduce background signals; fluorescence is generated upon binding to these early reprogramming cells, with positive cells appearing 7 days before iPS colonies are visible and stain positive for the conventional pluripotent marker TRA-1-60, and sorting BDL-E5-positive cells enriches populations that generate higher numbers and quality of iPS colonies. Its detection wavelength is Ex/Em = 578/599 nm.
For research use only. We do not sell to patients.
- Formula: C27H32BF3N4O3
- Molecular Weight:528.37
-
Storage:
Please store the product under the recommended conditions in the Certificate of Analysis.
Biological Activity
Description
In Vitro
Guide (The following is our recommended protocol. This protocol is for guidance only and should be modified according to your specific needs).
1. Stock Solution Preparation
1.2 Concentration recommendation: 500 nM
3. Staining Procedure
3.1 Sample type:[1]
3.1.1 Adherent cells: Trypsinization is needed for harvest prior to FACS.
3.1.2 Sample types include human adipose-derived stromal cells (ASCs), dental pulp stem cells (DPSCs), human-induced pluripotent stem (iPS) cells, and reprogramming somatic cells
3.2 Incubation conditions: Incubate with dye solution for 1 h.
3.3 Washing steps: No washing required for imaging; wash once with PBS for specific post-staining imaging conditions.
4. Controls
4.1 Non-reprogrammed somatic cells (ASCs, DPSCs) serve as negative controls.
4.2 Mature human iPS cells serve as positive controls.
4.3 Unstained cells serve as blank controls for FACS.
5. Detection & Analysis
5.1 Instrument: High-content imaging system or fluorescence-activated cell sorter (FACS)
5.1.1 Ex/Em wavelength: 578 nm/599 nm
5.2 Result analysis:
5.2.1 Fluorescence intensity changes: Increased fluorescence intensity correlates with progression of reprogramming, with positive cells showing significantly higher intensity than non-reprogrammed somatic cells.
5.2.2 Fluorescence localization: Co-localizes with Golgi complex marker in reprogramming cells.
5.2.3 Color changes: Yellow fluorescence is emitted from positive cells.
5.2.4 BDL-E5-positive cells are positive for pluripotency marker TRA-1-60, and give rise to viable iPS colonies upon sorting.
MedChemExpress (MCE) has not independently confirmed the accuracy of these methods. They are for reference only. Further protocols information, click here.
Chemical Information
-
Molecular Weight 528.37
-
Formula C27H32BF3N4O3
-
SMILES
O=C(CCC1=[N]2[B+3]([F-])([F-])[N-]3C(/C=C/C4=C(F)C=C(OC)C(OC)=C4)=CC(C)=C3C=C2C=C1)NCCN(C)C
-
Shipping
Room temperature in continental US; may vary elsewhere.
-
Storage
Please store the product under the recommended conditions in the Certificate of Analysis.
Protocols
-
Totipotent stem cell culture
Totipotent stem cells are all the cells from the fertilized egg to the 32-cell stage of oogenesis, with unlimited potential for differentiation into cells of various tissues and organs and formation of complete individual.
-
RNA extraction experimental
By lysing cells, releasing RNA, and removing impurities such as proteins and DNA, high-purity RNA products are finally obtained. The commonly used traditional method is the guanidine isothiocyanate/phenol/chloroform method (Trizol), which is suitable for a variety of animal materials including animal tissues, microorganisms, cultured cells, etc., and most plant materials.
-
Human iPSC generation/reprogramming culture
Human iPSC reprogramming converts somatic cells into pluripotent cells by introducing defined transcription factors; classic human studies used OCT3/4, SOX2, KLF4, and c-MYC, or OCT4, SOX2, NANOG, and LIN28, and judged reprogramming by embryonic-stem-cell-like morphology, pluripotency-marker expression, normal karyotype, and differentiation into derivatives of the three germ layers. This protocol is framed around non-integrating reprogramming culture, with Sendai virus, episomal plasmids, or synthetic modified mRNA as literature-supported delivery options; Sendai virus is an RNA vector reported to avoid host-genome integration, episomal vectors can generate integration-free human iPSCs, and modified mRNA can reprogram human cells while avoiding genomic modification.
-
CRISPR-Cas9 editing of human pluripotent stem cells
CRISPR-Cas9 editing of human pluripotent stem cells uses a guide RNA to direct Cas9 to a genomic target, where Cas9 creates a double-strand break that is repaired mainly by non-homologous end joining for knockout mutations or by homology-directed repair when a donor template is supplied for precise knock-in or sequence correction. The readout is generated by genotyping edited bulk populations or single-cell-derived clones, using PCR, sequencing, restriction-based assays, reporter fluorescence, or allele-specific analysis to distinguish unedited alleles, indels, precise donor-mediated edits, biallelic deletions, and unwanted on-target lesions.
Purity & Documentation
References
Calculators
Concentration (start) × Volume (start) = Concentration (final) × Volume (final)