1. Cell Cycle/DNA Damage
  2. DNA/RNA Synthesis
  3. 3'-O-(2-Nitrobenzyl)-dATP

3'-O-(2-Nitrobenzyl)-dATP is a reversible and photolabile DNA synthesis terminator. 3'-O-(2-Nitrobenzyl)-dATP incorporates into growing DNA strands to terminate synthesis in a base-specific manner. 3'-O-(2-Nitrobenzyl)-dATP undergoes efficient photolytic removal of its 3'-protecting group upon UV exposure to enable reinitiation of DNA synthesis. 3'-O-(2-Nitrobenzyl)-dATP supports development of the Base Addition Sequencing Scheme (BASS) via a complete stop-start DNA synthesis cycle.

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3'-O-(2-Nitrobenzyl)-dATP

3'-O-(2-Nitrobenzyl)-dATP Chemical Structure

CAS No. : 159954-97-9

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Description

3'-O-(2-Nitrobenzyl)-dATP is a reversible and photolabile DNA synthesis terminator. 3'-O-(2-Nitrobenzyl)-dATP incorporates into growing DNA strands to terminate synthesis in a base-specific manner. 3'-O-(2-Nitrobenzyl)-dATP undergoes efficient photolytic removal of its 3'-protecting group upon UV exposure to enable reinitiation of DNA synthesis. 3'-O-(2-Nitrobenzyl)-dATP supports development of the Base Addition Sequencing Scheme (BASS) via a complete stop-start DNA synthesis cycle[1].

In Vitro

3'-O-(2-Nitrobenzyl)-dATP (0.25-1 mM; 10 min) terminates Bst DNA polymerase-mediated DNA synthesis[1].
3'-O-(2-Nitrobenzyl)-dATP (250 μM; 10 min) terminates Bst DNA polymerase-mediated DNA synthesis in a base-specific manner; the 2-nitrobenzyl protecting group is efficiently removed by 10 minutes of UV exposure, allowing reinitiation of DNA synthesis[1].
3'-O-(2-Nitrobenzyl)-dATP (250 μM) induces incomplete termination of AmpliTaq® and VentR® exo- DNA polymerase-mediated DNA synthesis, induces complete termination of Bst DNA polymerase-mediated DNA synthesis, and inhibits Sequenase®-mediated DNA synthesis[1].

MedChemExpress (MCE) has not independently confirmed the accuracy of these methods. They are for reference only.

Molecular Weight

626.30

Formula

C17H21N6O14P3

CAS No.
SMILES

NC1=NC=NC2=C1N=CN2[C@H]3C[C@H](OCC4=CC=CC=C4[N+]([O-])=O)[C@@H](COP(OP(OP(O)(O)=O)(O)=O)(O)=O)O3

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Room temperature in continental US; may vary elsewhere.

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Please store the product under the recommended conditions in the Certificate of Analysis.

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Product Name:
3'-O-(2-Nitrobenzyl)-dATP
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HY-177901
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