DAPI dihydrochloride
Based on 169 publication(s) in Google Scholar
DAPI (4',6-Diamidino-2-phenylindole) dihydrochloride is a DAPI dye. DAPI is a fluorescent dye that binds strongly to DNA. It binds to the AT base pair of the double-stranded DNA minor groove, and one DAPI molecule can occupy three base pair positions. The fluorescence intensity of DAPI molecules bound to double-stranded DNA is increased by about 20 times, and it is commonly observed with fluorescence microscopy, and the amount of DNA can be determined based on the intensity of fluorescence. DAPI cannot penetrate intact cell membranes and is commonly used for staining damaged and fixed cells. DAPI (Compound 3) is an acid-sensing ion channel 3 (ASIC3) inhibitor. DAPI binds to ASIC3 and blocks the channel function. DAPI can be used in the study of chronic pain treatment (Ex/Em = 356/451 nm).
Nur für Forschungszwecke. Wir verkaufen nicht an Patienten.
- Reinheit: 99.90%
- CAS. Nr.: 28718-90-3
- Formel: C16H17Cl2N5
- Molecular Weight:350.25
-
Speicherung:
-20°C, sealed storage, away from moisture and light
* In solvent : -80°C, 6 months; -20°C, 1 month (sealed storage, away from moisture and light)
Publications Citing Use of MedChemExpress (MCE) DAPI dihydrochloride
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- Mol Cancer. 2025 May 26;24(1):151. [Abstract]
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- Nat Methods. 2024 Apr;21(4):680-691. [Abstract]
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- Cancer Res. 2025 Sep 18. [Abstract]
- Adv Funct Mater. 2025 Nov 3.
- Adv Funct Mater. 2022: 2204636.
- Autophagy. 2026 May 25:1-21. [Abstract]
- Autophagy. 2022 Aug;18(8):1969-1981. [Abstract]
- Nat Commun. 2026 Jun 16. [Abstract]
- Nat Commun. 2026 May 8;17(1):4206. [Abstract]
- Nat Commun. 2024 Sep 1;15(1):7603. [Abstract]
- Nat Commun. 2024 Aug 10;15(1):6845. [Abstract]
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- Small. 2025 Oct 25:e09351. [Abstract]
- Cancer Lett. 2021 Apr 28:504:125-136. [Abstract]
- J Immunother Cancer. 2025 Feb 6;13(2):e010150. [Abstract]
- Phytomedicine. 2020 Mar:68:153146. [Abstract]
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- Cell Rep. 2023 Jul 8;42(7):112789. [Abstract]
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- SSRN. 2023 Sep 6.
- SSRN. 2023 May 10.
- Research Square Print. 2023 Feb 2.
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Cell Imaging/Staining
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IF
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IF
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IF
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Biologische Aktivität
Guidelines (The following is our recommended protocol. This protocol only provides guidance and should be modified according to your specific needs).
1. Preparation of DAPI dihydrochloride working solution
Dilute the stock solution with serum-free cell culture medium or PBS to obtain a working solution of 1-10 μg/mL.
Note: Please adjust the concentration of the DAPI dihydrochloride working solution according to your needs.
2. Cell staining
2.1 Suspension cells (96-well plate)
a. Centrifuge at 1000 g at 4°C for 3-5 minutes, then discard the supernatant. Wash twice with PBS for 5 minutes each time. Adjust the cell density to 1×106/mL.
b. Add 1 mL working solution and incubate at room temperature for 3-10 minutes.
c. Centrifuge at 400 g at 4°C for 3-4 minutes and discard the supernatant.
d. Wash twice with PBS for 5 minutes each time.
e. Resuspend the cells in serum-free cell culture medium or PBS. Observe using a fluorescence microscope or flow cytometry.
2.2 Adherent cells
a. Culture adherent cells on sterile coverslips.
b. Remove the coverslips from the culture medium and aspirate excess medium.
c. Add 100 μL working solution, gently shake to fully cover the cells, and incubate at room temperature for 3-10 minutes.
d. Wash twice with culture medium for 5 minutes each time. Observe using a fluorescence microscope or flow cytometer.
Storage
Store at -20°C for 1 year. Protect from light.
Notes 1. Please adjust the concentration of the DAPI dihydrochloride working solution according to actual conditions.
2. This product is for R&D use only and is not intended for use in drugs, household, or other purposes.
3. For your safety and health, please wear a lab coat and disposable gloves during operation.
MedChemExpress (MCE) has not independently confirmed the accuracy of these methods. They are for reference only.
451
356
Chemical Information
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CAS. Nr. 28718-90-3
-
Appearance Solid
-
Molecular Weight 350.25
-
Formel C16H17Cl2N5
-
Color Light yellow to green yellow
-
SMILES
N=C(C1=CC2=C(C=C1)C=C(C3=CC=C(C(N)=N)C=C3)N2)N.[H]Cl.[H]Cl
-
Synonyms
4',6-Diamidino-2-phenylindole dihydrochloride
-
Versand
Room temperature in continental US; may vary elsewhere.
-
Speicherung
-20°C, sealed storage, away from moisture and light
* In solvent : -80°C, 6 months; -20°C, 1 month (sealed storage, away from moisture and light)
Publications (169)
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Journal Impact Factor
-
Most Recent
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Mol Cancer
Hsa_circ_0038737 promotes PARPi resistance in castration-resistant prostate cancer via IGF2BP3-mediated DNPH1 mRNA stabilization. [Abstract]2025 Oct 2;24(1):238. PMID: 41039575 -
Mol Cancer
GP73-dependent regulation of exosome biogenesis promotes colorectal cancer liver metastasis. [Abstract]2025 May 26;24(1):151. PMID: 40414849 -
Cell Res
Glucose starvation mimetic aldometanib removes immune barriers permitting mice with hepatocellular carcinoma to live to normal ages. [Abstract]2025 Dec;35(12):934-953. PMID: 41286115 -
Cell Res
Integrated proteogenomic characterization across major histological types of pituitary neuroendocrine tumors. [Abstract]2022 Dec;32(12):1047-1067. PMID: 36307579 -
Nat Methods
2024 Apr;21(4):680-691. PMID: 38036855 -
Light Sci Appl
2022 Nov 11;11(1):324. PMID: 36369148 -
Cancer Res
In silico Digital Twins of Bone Metastasis Enable Investigation of Tumor Progression and Therapy Response. [Abstract]2025 Sep 18. PMID: 40965325 -
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Autophagy
Byakangelicin alleviates metabolic dysfunction-associated steatohepatitis by selective inhibition of a non-canonical MTORC1 signaling pathway. [Abstract]2026 May 25:1-21. PMID: 42152469 -
Autophagy
2AB protein of Senecavirus A antagonizes selective autophagy and type I interferon production by degrading LC3 and MARCHF8. [Abstract]2022 Aug;18(8):1969-1981. PMID: 34964697 -
Nat Commun
2026 Jun 16. PMID: 42303986 -
Nat Commun
The ISG Atlas: a loss-of-function analysis characterizes antiviral properties of interferon stimulated genes. [Abstract]2026 May 8;17(1):4206. PMID: 42103727 -
Nat Commun
2024 Sep 1;15(1):7603. PMID: 39217143 -
Nat Commun
Intestinal Nogo-B reduces GLP1 levels by binding to proglucagon on the endoplasmic reticulum to inhibit PCSK1 cleavage. [Abstract]2024 Aug 10;15(1):6845. PMID: 39122737 -
Nat Commun
Cholesterol removal improves performance of a model biomimetic system to co-deliver a photothermal agent and a STING agonist for cancer immunotherapy. [Abstract]2023 Aug 22;14(1):5111. PMID: 37607938 -
ACS Nano
Biomodified Extracellular Vesicles Remodel the Intestinal Microenvironment to Overcome Radiation Enteritis. [Abstract]2023 Jul 25;17(14):14079-14098. PMID: 37399352 -
J Adv Res
Columbianadin ameliorates rheumatoid arthritis by attenuating synoviocyte hyperplasia through targeted vimentin to inhibit the VAV2/Rac-1 signaling pathway. [Abstract]2025 Aug:74:609-620. PMID: 39369957
DAPI dihydrochloride purchased from MedChemExpress. Usage Cited in: J Adv Res. 2025 Aug:74:609-620. [Abstract]
Effects of silencing and overexpression of vimentin on apoptosis of MH7A cells. TMRM/DAPI staining (n = 4).
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Redox Biol
Artesunate induces ferroptosis in gastric cancer by targeting the TFRC-HSPA9 axis for iron homeostasis regulation. [Abstract]2025 Sep 10:87:103867. PMID: 40946428 -
J Nanobiotechnology
Oral alginate microspheres deliver Rg3/aspirin liposomes to modulate foam cells and gut microbiota in atherosclerosis. [Abstract]2026 May 3;24(1):586. PMID: 42071219 -
J Nanobiotechnology
Single BMSC-derived cartilage organoids for gradient heterogeneous osteochondral regeneration by leveraging native vascular microenvironment. [Abstract]2025 Apr 29;23(1):325. PMID: 40301867 -
Theranostics
Inhibition of macrophage inflammasome assembly and pyroptosis with GC-1 ameliorates acute lung injury. [Abstract]2025 Jan 20;15(6):2360-2374. PMID: 39990234 -
J Biomed Sci
A G-quadruplex-binding platinum complex induces cancer mitochondrial dysfunction through dual-targeting mitochondrial and nuclear G4 enriched genome. [Abstract]2024 May 13;31(1):50. PMID: 38741159 -
J Clin Invest
MOGAT3-Mediated DAG Accumulation Drives Acquired Resistance to Anti-BRAF/EGFR Therapy in BRAFV600E-Mutant Metastatic Colorectal Cancer. [Abstract]2024 Oct 22;134(24):e182217. PMID: 39436710 -
Adv Sci (Weinh)
Bacteroides Fragilis Exacerbates T2D Vascular Calcification by Secreting Extracellular Vesicles to Induce M2 Macrophages. [Abstract]2025 Feb;12(5):e2410495. PMID: 39665119 -
Adv Sci (Weinh)
The Toxoplasma Effector GRA4 Hijacks Host TBK1 to Oppositely Regulate Anti-T. Gondii Immunity and Tumor Immunotherapy. [Abstract]2024 Aug;11(32):e2400952. PMID: 39031880 -
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Biomaterials
Fully synthetic nanofibrillar hydrogel for the growth and enzyme-free release of patient-derived ovarian tumor organoids. [Abstract]2025 Sep 17:326:123723. PMID: 40976136 -
Cell Death Differ
2024 Aug;31(8):1085-1098. PMID: 38783090 -
Research (Wash D C)
Cell Shock Absorption via Stress Relaxation Hydrogel Microspheres for Alleviating Endoplasmic Reticulum Stress in Chondrocytes. [Abstract]2025 Jul 17:8:0777. PMID: 40678150 -
Research (Wash D C)
POP1 Facilitates Proliferation in Triple-Negative Breast Cancer via m6A-Dependent Degradation of CDKN1A mRNA. [Abstract]2024 Sep 12:7:0472. PMID: 39268503 -
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J Control Release
Anti-CLEC7A nanobody in situ engineering promotes amyloid-β oligomers clearance by CAR-microglia to alleviate Alzheimer's disease pathology in mice. [Abstract]2026 Apr 10:392:114710. PMID: 41702507 -
J Control Release
Targeting polyamine metabolism induces oxidative/carbonyl stress to reinvigorate antitumor immunity in prostate cancer. [Abstract]2025 Sep 30;388(Pt 1):114283. PMID: 41038348 -
J Control Release
Chemotaxis-driven hybrid liposomes recover intestinal homeostasis for targeted colitis therapy. [Abstract]2025 Apr 10:380:829-845. PMID: 39961435 -
Pharmacol Res
Lysosome-triggered nanotherapy packages osteoclast apoptotic bodies with pro-anabolic lipids to couple anti-resorption and bone formation. [Abstract]2026 Apr 30:108225. PMID: 42069319 -
Cell Death Dis
The EHMT2-MBLAC2 axis suppresses ribosomal DNA transcription in response to nucleolar DNA damage. [Abstract]2026 Mar 18;17(1):320. PMID: 41851073 -
Cell Death Dis
2025 May 5;16(1):361. PMID: 40325003 -
Small
Neonatal Liver-Derived Extracellular Vesicle: Unlocking Mitochondrial Repair and Regenerative Mechanisms in Alcoholic Liver Disease. [Abstract]2025 Oct 25:e09351. PMID: 41137551 -
Cancer Lett
Targeting ubiquitin conjugating enzyme UbcH5b by a triterpenoid PC3-15 from Schisandra plants sensitizes triple-negative breast cancer cells to lapatinib. [Abstract]2021 Apr 28:504:125-136. PMID: 33607208 -
J Immunother Cancer
Reinforcing cancer immunotherapy with engineered porous hollow mycobacterium tuberculosis loaded with tumor neoantigens. [Abstract]2025 Feb 6;13(2):e010150. PMID: 39915006 -
Phytomedicine
Sweroside promotes osteoblastic differentiation and mineralization via interaction of membrane estrogen receptor-α and GPR30 mediated p38 signalling pathway on MC3T3-E1 cells. [Abstract]2020 Mar:68:153146. PMID: 32028183
DAPI dihydrochloride purchased from MedChemExpress. Usage Cited in: Phytomedicine. 2020 Mar:68:153146. [Abstract]
MC3T3-E1 cells incubated with 1 μg/mL DAPI dihydrochloride for 5 min and observed them under a fluorescence microscope. Effects of sweroside on ER-α expressions by immunofluorescence, white and yellow arrows mean target protein distribution in the cell nuclei and membrane, respectively. Scale bar = 20 µm.
DAPI dihydrochloride purchased from MedChemExpress. Usage Cited in: Phytomedicine. 2020 Mar:68:153146. [Abstract]
MC3T3-E1 cells incubated with 1 μg/mL DAPI dihydrochloride for 5 min and observed them under a fluorescence microscope. Effects of sweroside on GPR30 expressions by immunofluorescence, white and yellow arrows mean target protein distribution in the cell nuclei and membrane, respectively. Scale bar = 20 µm.
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Adv Healthc Mater
Bioprinted Fibroblast Mediated Heterogeneous Tumor Microenvironment for Studying Tumor-Stroma Interaction and Drug Screening. [Abstract]2025 Mar;14(7):e2404642. PMID: 39840601 -
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Cell Death Discov
Targeting the HECTD3-p62 axis increases the radiosensitivity of triple negative breast cancer cells. [Abstract]2024 Nov 1;10(1):462. PMID: 39487119 -
Cell Death Discov
Nuclear PCGF3 inhibits the antiviral immune response by suppressing the interferon-stimulated gene. [Abstract]2024 Oct 5;10(1):429. PMID: 39368978 -
Acta Pharmacol Sin
2021 Jul;42(7):1111-1123. PMID: 33637947
DAPI dihydrochloride purchased from MedChemExpress. Usage Cited in: Acta Pharmacol Sin. 2021 Jul;42(7):1111-1123. [Abstract]
Mice intestine tissue sections were incubated with a TUNEL reaction mixture for 1 h at 37 °C in the dark. Next, the sections were stained with 0.1 μg/mL DAPI.
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Acta Biomater
A bioinspired hyperthermic macrophage-based polypyrrole-polyethylenimine (Ppy-PEI) nanocomplex carrier to prevent and disrupt thrombotic fibrin clots. [Abstract]2019 Sep 15:96:468-479. PMID: 31260820
DAPI dihydrochloride purchased from MedChemExpress. Usage Cited in: Acta Biomater. 2019 Sep 15:96:468-479. [Abstract]
CLSM observations of tested Cy5-nanocomplexes incubated with RAW 264.7 macrophages show the fluorescent distributions of DAPI, nanocomplexes, and ROS (DCFH-DA) in the presence and absence NIR treatment.
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J Nucl Med
2022 Jul;63(7):1039-1045. PMID: 34711616 -
Food Res Int
Orally engineered liver-targeted garlic exosome-like nanovesicles for astaxanthin precise delivery against alcoholic liver disease in mice. [Abstract]2026 Jun 1;233(Pt 2):119022. PMID: 41956676 -
Food Res Int
Charge-governed ionic essential oil-loaded liposomes for enhanced penetration and removal of Listeria monocytogenes biofilms. [Abstract]2026 Apr 1:229:118488. PMID: 41763810 -
Int J Biol Macromol
2026 Jan;335(Pt 1):149233. PMID: 41308762 -
Int J Biol Macromol
Bacterial cellulose repairs asthmatic epithelial injury by reprogramming CDS1-mediated phosphatidylinositol metabolism to inhibit PI3K/AKT signaling. [Abstract]2025 Dec 16;338(Pt 2):149695. PMID: 41407218 -
Int J Biol Macromol
2024 Sep;276(Pt 1):133652. PMID: 38971273 -
Int J Mol Med
MOTS‑c protects against placental injury via Nrf2 activation in hypoxia‑induced intrauterine growth restriction mice. [Abstract]2026 Jan;57(1):26. PMID: 41268602 -
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Int J Pharm X
A blood-brain barrier-penetrating nanoreactor for tumor microenvironment modulation, precise MR imaging and synergistic therapy of glioma. [Abstract]2025 Nov 17:10:100448. PMID: 41362442 -
Br J Cancer
New mechanistic understanding of FXR agonist Vonafexor: inducing sublethal damage of HBV-positive liver cancer cells via promoting anti-tumor immunity. [Abstract]2025 Sep;133(5):697-708. PMID: 40588513 -
ACS Appl Mater Interfaces
FRET Nanosensor Based on DNA Tetrahedron for Visualizing PLD3 Fluctuation in Mouse Models of Alzheimer's Disease. [Abstract]2025 Mar 5;17(9):13461-13470. PMID: 39973147 -
Cell Rep
Beyond mitochondrial transfer, cell fusion rescues metabolic dysfunction and boosts malignancy in adenoid cystic carcinoma. [Abstract]2024 Aug 30;43(9):114652. PMID: 39217612 -
Cell Rep
2023 Jul 8;42(7):112789. PMID: 37422762 -
Cell Prolif
Flavonoid chrysin activates both TrkB and FGFR1 receptors while upregulates their endogenous ligands such as brain derived neurotrophic factor to promote human neurogenesis. [Abstract]2025 Jan;58(1):e13732. PMID: 39331585 -
J Med Chem
Cationic Photosensitizer-Functionalized Bacteria for Targeted Photothermal-Photodynamic Therapy with Immune Activation. [Abstract]2026 Jun 11;69(11):13683-13696. PMID: 42226544 -
J Med Chem
Dual SYK-HDAC Inhibitor Elicits Striking Efficacy against Acute Myeloid Leukemia: Rational Design, Synthesis, and Biological Evaluation. [Abstract]2026 Jun 9. PMID: 42262889 -
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PLoS Biol
Casein kinase 2-mediated phosphorylation of the splicing factor SF3B3 plays a key role in esophageal squamous cell carcinoma progression. [Abstract]2026 Apr 10;24(4):e3003729. PMID: 41961893 -
Pharmaceutics
A Nanoliposome Platform Co-Delivery of Hydroxypinacolone Retinoate and Carnosine for Enhanced Epidermal/Dermal Delivery and Multi-Functional Anti-Aging Efficacy. [Abstract]2026 Apr 8;18(4):454. PMID: 42076106 -
Neurosci Bull
Unveiling a Novel Mechanism in Noise-Induced Hearing Loss: Oxeiptosis-Mediated Regulated Cell Death of Cochlear Hair Cell. [Abstract]2026 Feb 16. PMID: 41697573 -
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Lösungsmittel & Löslichkeit
DMSO : 75 mg/mL (214.13 mM; Need ultrasonic; Hygroscopic DMSO has a significant impact on the solubility of product, please use newly opened DMSO)
H2O : 5.56 mg/mL (15.87 mM; ultrasonic and warming and heat to 60°C)
Please refer to the solubility information to select the appropriate solvent. Once prepared, please aliquot and store the solution to prevent product inactivation from repeated freeze-thaw cycles.
Storage method and period of stock solution: -80°C, 6 months; -20°C, 1 month (sealed storage, away from moisture and light). When stored at -80°C, please use it within 6 months. When stored at -20°C, please use it within 1 month.
* Note: If you choose water as the stock solution, please dilute it to the working solution, then filter and sterilize it with a 0.22 μm filter before use.
Please refer to the solubility information to select the appropriate solvent. Once prepared, please aliquot and store the solution to prevent product inactivation from repeated freeze-thaw cycles.
Storage method and period of stock solution: -80°C, 6 months; -20°C, 1 month (sealed storage, away from moisture and light). When stored at -80°C, please use it within 6 months. When stored at -20°C, please use it within 1 month.
* Note: If you choose water as the stock solution, please dilute it to the working solution, then filter and sterilize it with a 0.22 μm filter before use.
Konzentration (Stammlösung) × Volumen (Stammlösung) = Konzentration (Ziellösung) × Volumen (Ziellösung)
Reinheit & Dokumentation
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Data Sheet (274 KB)
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SDS (394 KB)
- English - EN (394 KB)
- Français - FR (394 KB)
- Deutsch - DE (394 KB)
- Norwegian - NO (394 KB)
- Español - ES (394 KB)
- Swedish - SV (394 KB)
- Italian - IT (394 KB)
- Korean - KR (394 KB)
- Portuguese - PT (394 KB)
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Handling Instructions (2659 KB)
Verweise
Complete Stock Solution Preparation Table
Please refer to the solubility information to select the appropriate solvent. Once prepared, please aliquot and store the solution to prevent product inactivation from repeated freeze-thaw cycles.
Storage method and period of stock solution: -80°C, 6 months; -20°C, 1 month (sealed storage, away from moisture and light). When stored at -80°C, please use it within 6 months. When stored at -20°C, please use it within 1 month.
| Optional Solvent | Concentration Solvent Mass | 1 mg | 5 mg | 10 mg | 25 mg |
|---|---|---|---|---|---|
| H2O / DMSO | 1 mM | 2.8551 mL | 14.2755 mL | 28.5510 mL | 71.3776 mL |
| 5 mM | 0.5710 mL | 2.8551 mL | 5.7102 mL | 14.2755 mL | |
| 10 mM | 0.2855 mL | 1.4276 mL | 2.8551 mL | 7.1378 mL | |
| 15 mM | 0.1903 mL | 0.9517 mL | 1.9034 mL | 4.7585 mL | |
| DMSO | 20 mM | 0.1428 mL | 0.7138 mL | 1.4276 mL | 3.5689 mL |
| 25 mM | 0.1142 mL | 0.5710 mL | 1.1420 mL | 2.8551 mL | |
| 30 mM | 0.0952 mL | 0.4759 mL | 0.9517 mL | 2.3793 mL | |
| 40 mM | 0.0714 mL | 0.3569 mL | 0.7138 mL | 1.7844 mL | |
| 50 mM | 0.0571 mL | 0.2855 mL | 0.5710 mL | 1.4276 mL | |
| 60 mM | 0.0476 mL | 0.2379 mL | 0.4759 mL | 1.1896 mL | |
| 80 mM | 0.0357 mL | 0.1784 mL | 0.3569 mL | 0.8922 mL | |
| 100 mM | 0.0286 mL | 0.1428 mL | 0.2855 mL | 0.7138 mL |
* Note: If you choose water as the stock solution, please dilute it to the working solution, then filter and sterilize it with a 0.22 μm filter before use.