ATF6B - activating transcription factor 6 beta Gene
Also Known as G13; CREBL1; CREB-RP
Species: Homo sapiens
About ATF6B
This gene has 8 transcripts (splice variants), 1 gene allele, 189 orthologues and 9 paralogues. Ubiquitous expression in spleen (RPKM 32.2), skin (RPKM 32.1) and 25 other tissues.
Summary
The protein encoded by this gene is a transcription factor in the unfolded protein response (UPR) pathway during ER stress. Either as a homodimer or as a heterodimer with ATF6-alpha, the encoded protein binds to the ER stress response element, interacting with nuclear transcription factor Y to activate UPR target genes. The protein is normally found in the membrane of the endoplasmic reticulum; however, under ER stress, the N-terminal cytoplasmic domain is cleaved from the rest of the protein and translocates to the nucleus. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Oct 2008]
ATF6B Products (2)
| mRNA | Protein | Name |
|---|---|---|
| NM_001136153.2 | NP_001129625.1 | cyclic AMP-dependent transcription factor ATF-6 beta isoform b |
| NM_004381.5 | NP_004372.3 | cyclic AMP-dependent transcription factor ATF-6 beta isoform a |
| Molecular Function GO Annotation | Evidence | References | Source |
|---|---|---|---|
| contributes to DNA-binding transcription activator activity, RNA polymerase II-specific |
IDA
IDA: Inferred from direct assay
|
14973138 | GOA |
| enables DNA-binding transcription factor activity |
IDA
IDA: Inferred from direct assay
|
11256944 | GOA |
| contributes to RNA polymerase II cis-regulatory region sequence-specific DNA binding |
IDA
IDA: Inferred from direct assay
|
11256944 | GOA |
| enables protein binding |
IPI
IPI: Inferred from physical interaction
|
12445808 | GOA |
| enables sequence-specific double-stranded DNA binding |
IDA
IDA: Inferred from direct assay
|
28473536 | GOA |
| enables transcription cis-regulatory region binding |
IDA
IDA: Inferred from direct assay
|
11256944 | GOA |
| Biological Process GO Annotation | Evidence | References | Source |
|---|---|---|---|
| involved in negative regulation of ATF6-mediated unfolded protein response |
IDA
IDA: Inferred from direct assay
|
9837962 | GOA |
| involved in positive regulation of transcription by RNA polymerase II |
IDA
IDA: Inferred from direct assay
|
11256944 | GOA |
| involved in response to endoplasmic reticulum stress |
IDA
IDA: Inferred from direct assay
|
11256944 | GOA |
| Cellular Component GO Annotation | Evidence | References | Source |
|---|---|---|---|
| part of RNA polymerase II transcription regulator complex |
IDA
IDA: Inferred from direct assay
|
11256944 | GOA |
| part of RNA polymerase II transcription regulator complex |
IPI
IPI: Inferred from physical interaction
|
23661758 | GOA |
| located in endoplasmic reticulum membrane |
IDA
IDA: Inferred from direct assay
|
11256944 | GOA |
| located in nucleus |
IDA
IDA: Inferred from direct assay
|
11256944 | GOA |
| part of protein-DNA complex |
IDA
IDA: Inferred from direct assay
|
11256944 | GOA |
ATF6B Protein Structure
bZIP_1: bZIP transcription factor (321 - 382)
- 0
- 200
- 400
- 600
- 700 a.a.
| Protein Preferred Names | Protein Names | |
|---|---|---|
|
cyclic AMP-dependent transcription factor ATF-6 beta |
|
ATF6B Protein-protein interaction Information
|
Type
|
Protein Name | Protein ID | Interactor | Interactor Species | Interactor ID | Detection Method | References |
|---|---|---|---|---|---|---|---|
|
Intra
|
ATF6B | Q99941 | XBP1 | Homo sapiens | P17861 | 23661758 | |
|
Intra
|
ATF6B | Q99941 | ATF6 | Homo sapiens | P18850 | 23661758 | |
|
Cross
|
ATF6B | Q99941 | P27958-PRO_0000037575 | Hepatitis C virus | P27958-PRO_0000037575 | 12445808 |
Related Diseases
| Diseases | Alias | |
|---|---|---|
| Kidney Fibrosarcoma |
|
Orthologs Information
| Species | Symbol | Source | ID |
|---|---|---|---|
| Macaca mulatta | ATF6B | VGNC | VGNC:81026 |
| Mus musculus | ATF6B | MGD | MGI:105121 |
| Bos taurus | ATF6B | VGNC | VGNC:26245 |
| Rattus norvegicus | ATF6B | RGD | RGD:1303317 |
| Felis catus | ATF6B | VGNC | VGNC:59993 |
| Canis familiaris | ATF6B | VGNC | VGNC:52104 |
| Others | ATF6B | NCBI |