DDX56 - DEAD-box helicase 56 Gene
Also Known as DDX21; DDX26; NOH61
Species: Homo sapiens
About DDX56
This gene has 12 transcripts (splice variants), 195 orthologues and 38 paralogues. Ubiquitous expression in thyroid (RPKM 15.8), lymph node (RPKM 15.1) and 25 other tissues.
Summary
This gene encodes a member of the DEAD box protein family. DEAD box proteins, characterized by the conserved motif Asp-Glu-Ala-Asp (DEAD), are putative RNA helicases. They are implicated in a number of cellular processes involving alteration of RNA secondary structure such as translation initiation, nuclear and mitochondrial splicing, and ribosome and spliceosome assembly. Based on their distribution patterns, some members of this family are believed to be involved in embryogenesis, spermatogenesis, and cellular growth and division. The protein encoded by this gene shows ATPase activity in the presence of polynucleotides and associates with nucleoplasmic 65S preribosomal particles. This gene may be involved in ribosome synthesis, most likely during assembly of the large 60S ribosomal subunit. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Mar 2012]
DDX56 Products (2)
| mRNA | Protein | Name |
|---|---|---|
| NM_001257189.2 | NP_001244118.1 | probable ATP-dependent RNA helicase DDX56 isoform 2 |
| NM_019082.4 | NP_061955.1 | probable ATP-dependent RNA helicase DDX56 isoform 1 |
| Molecular Function GO Annotation | Evidence | References | Source |
|---|---|---|---|
| enables RNA stem-loop binding |
IDA
IDA: Inferred from direct assay
|
33109765 | GOA |
| enables protein binding |
IPI
IPI: Inferred from physical interaction
|
32296183 | GOA |
| enables protein sequestering activity |
IDA
IDA: Inferred from direct assay
|
31340999 | GOA |
| Biological Process GO Annotation | Evidence | References | Source |
|---|---|---|---|
| involved in defense response to virus |
IDA
IDA: Inferred from direct assay
|
33109765 | GOA |
| acts upstream of negative effect modulation by host of viral RNA genome replication |
IMP
IMP: Inferred from mutant phenotype
|
33109765 | GOA |
| involved in negative regulation of type I interferon production |
IDA
IDA: Inferred from direct assay
|
31340999 | GOA |
| Cellular Component GO Annotation | Evidence | References | Source |
|---|---|---|---|
| located in cytosol |
IDA
IDA: Inferred from direct assay
|
33109765 | GOA |
| located in nucleolus |
IDA
IDA: Inferred from direct assay
|
33109765 | GOA |
| is active in nucleus |
IDA
IDA: Inferred from direct assay
|
31340999 | GOA |
DDX56 Protein Structure
DEAD: DEAD/DEAH box helicase (31 - 206)
Helicase_C: Helicase conserved C-terminal domain (276 - 319)
Helicase_C: Helicase conserved C-terminal domain (344 - 380)
- 0
- 100
- 200
- 300
- 400
- 500
- 547 a.a.
| Protein Preferred Names | Protein Names | |
|---|---|---|
|
probable ATP-dependent RNA helicase DDX56 |
|
Orthologs Information
| Species | Symbol | Source | ID |
|---|---|---|---|
| Bos taurus | DDX56 | VGNC | VGNC:27978 |
| Rattus norvegicus | DDX56 | RGD | RGD:1303195 |
| Canis familiaris | DDX56 | VGNC | VGNC:39866 |
| Mus musculus | DDX56 | MGD | MGI:1277172 |
| Felis catus | DDX56 | VGNC | VGNC:61417 |
| Others | DDX56 | NCBI |