Mechanisms of Progression of Myeloid Preleukemia to Transformed Myeloid Leukemia in Children with Down Syndrome

  • Cancer Cell. 2019 Aug 12;36(2):123-138.e10. doi: 10.1016/j.ccell.2019.06.007.
Maurice Labuhn  1 Kelly Perkins  2 Sören Matzk  3 Leila Varghese  4 Catherine Garnett  2 Elli Papaemmanuil  5 Marlen Metzner  2 Alison Kennedy  2 Vyacheslav Amstislavskiy  6 Thomas Risch  6 Raj Bhayadia  7 David Samulowski  7 David Cruz Hernandez  2 Bilyana Stoilova  2 Valentina Iotchkova  2 Udo Oppermann  8 Carina Scheer  1 Kenichi Yoshida  9 Adrian Schwarzer  1 Jeffrey W Taub  10 John D Crispino  11 Mitchell J Weiss  12 Yasuhide Hayashi  13 Takashi Taga  14 Etsuro Ito  15 Seishi Ogawa  16 Dirk Reinhardt  17 Marie-Laure Yaspo  6 Peter J Campbell  18 Irene Roberts  19 Stefan N Constantinescu  4 Paresh Vyas  20 Dirk Heckl  21 Jan-Henning Klusmann  22
Affiliations
  • 1. Pediatric Hematology and Oncology, Hannover Medical School, 30625 Hannover, Germany.
  • 2. MRC MHU, BRC Hematology Theme, Oxford Biomedical Research Centre, Oxford Centre for Haematology, WIMM, Radcliffe Department of Medicine, University of Oxford, Oxford OX3 9DU, UK.
  • 3. Pediatric Hematology and Oncology, Martin-Luther-University Halle-Wittenberg, 06120 Halle, Germany; Max Planck Institute for Molecular Genetics, 14195 Berlin, Germany.
  • 4. Ludwig Institute for Cancer Research Brussels Branch, 1200 Brussels, Belgium.
  • 5. Departments of Epidemiology and Biostatistics and Cancer Biology, MSKCC, New York, NY 10065, USA.
  • 6. Max Planck Institute for Molecular Genetics, 14195 Berlin, Germany.
  • 7. Pediatric Hematology and Oncology, Martin-Luther-University Halle-Wittenberg, 06120 Halle, Germany.
  • 8. Botnar Research Centre, NDORMS, Oxford NIHR BRC and Structural Genomics Consortium, UK University of Oxford, Oxford OX3 7LD, UK.
  • 9. Department of Pathology and Tumor Biology, Graduate School of Medicine, Kyoto University, Sakyo-ku, Kyoto 606-8315 Japan.
  • 10. Division of Pediatric Hematology/Oncology, Children's Hospital of Michigan, Wayne State University School of Medicine, Detroit, MI 48201, USA.
  • 11. Division of Hematology/Oncology, Northwestern University, Chicago, IL 60611, USA.
  • 12. Hematology Department, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.
  • 13. Institute of Physiology and Medicine, Jobu University, Takasaki-shi, Gunma 370-0033, Japan.
  • 14. Department of Pediatrics, Shiga University of Medical Science, Shiga 520-2192, Japan.
  • 15. Department of Pediatrics, Hirosaki University Graduate School of Medicine, Hirosaki 036-8562, Japan.
  • 16. Department of Pathology and Tumor Biology, Graduate School of Medicine, Kyoto University, Sakyo-ku, Kyoto 606-8315 Japan; Center for Hematology and Regenerative Medicine, Karolinska Institute, 171 77 Stockholm, Sweden.
  • 17. Pediatric Hematology and Oncology, Pediatrics III, University Hospital Essen, 45122 Essen, Germany.
  • 18. Cancer Genome Project, Wellcome Trust Sanger Institute, Hinxton CB10 1SA, UK.
  • 19. MRC MHU, BRC Hematology Theme, Oxford Biomedical Research Centre, Oxford Centre for Haematology, WIMM, Radcliffe Department of Medicine, University of Oxford, Oxford OX3 9DU, UK; Department of Paediatrics, University of Oxford, Oxford OX3 9DS, UK.
  • 20. MRC MHU, BRC Hematology Theme, Oxford Biomedical Research Centre, Oxford Centre for Haematology, WIMM, Radcliffe Department of Medicine, University of Oxford, Oxford OX3 9DU, UK; Department of Haematology, Oxford University Hospitals NHS Trust, Oxford OX3 7LE, UK. Electronic address: [email protected].
  • 21. Pediatric Hematology and Oncology, Hannover Medical School, 30625 Hannover, Germany; Pediatric Hematology and Oncology, Martin-Luther-University Halle-Wittenberg, 06120 Halle, Germany. Electronic address: [email protected].
  • 22. Pediatric Hematology and Oncology, Martin-Luther-University Halle-Wittenberg, 06120 Halle, Germany. Electronic address: [email protected].
Abstract

Myeloid leukemia in Down syndrome (ML-DS) clonally evolves from transient abnormal myelopoiesis (TAM), a preleukemic condition in DS newborns. To define mechanisms of leukemic transformation, we combined exome and targeted resequencing of 111 TAM and 141 ML-DS samples with functional analyses. TAM requires trisomy 21 and truncating mutations in GATA1; additional TAM variants are usually not pathogenic. By contrast, in ML-DS, clonal and subclonal variants are functionally required. We identified a recurrent and oncogenic hotspot gain-of-function mutation in myeloid cytokine receptor CSF2RB. By a multiplex CRISPR/Cas9 screen in an in vivo murine TAM model, we tested loss-of-function of 22 recurrently mutated ML-DS genes. Loss of 18 different genes produced leukemias that phenotypically, genetically, and transcriptionally mirrored ML-DS.

Keywords
Acute myeloid leukemia; CRISPR screen; Down syndrome; GATA1; cancer transformation; preleukemia.
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