HNRNPD - heterogeneous nuclear ribonucleoprotein D Gene
Also Known as P37; AUF1; AUF1A; HNRPD; hnRNPD0
Species: Homo sapiens
About HNRNPD
This gene has 18 transcripts (splice variants), 198 orthologues, 36 paralogues and is associated with 1 phenotype. Ubiquitous expression in lymph node (RPKM 80.4), bone marrow (RPKM 72.5) and 25 other tissues.
Summary
This gene belongs to the subfamily of ubiquitously expressed heterogeneous nuclear ribonucleoproteins (hnRNPs). The hnRNPs are nucleic acid binding proteins and they complex with heterogeneous nuclear RNA (hnRNA). These proteins are associated with pre-mRNAs in the nucleus and appear to influence pre-mRNA processing and Other aspects of mRNA metabolism and transport. While all of the hnRNPs are present in the nucleus, some seem to shuttle between the nucleus and the cytoplasm. The hnRNP proteins have distinct nucleic acid binding properties. The protein encoded by this gene has two repeats of quasi-RRM domains that bind to RNAs. It localizes to both the nucleus and the cytoplasm. This protein is implicated in the regulation of mRNA stability. Alternative splicing of this gene results in four transcript variants. [provided by RefSeq, Jul 2008]
HNRNPD Products (4)
| mRNA | Protein | Name |
|---|---|---|
| NM_001003810.2 | NP_001003810.1 | heterogeneous nuclear ribonucleoprotein D0 isoform d |
| NM_002138.4 | NP_002129.2 | heterogeneous nuclear ribonucleoprotein D0 isoform c |
| NM_031369.3 | NP_112737.1 | heterogeneous nuclear ribonucleoprotein D0 isoform b |
| NM_031370.3 | NP_112738.1 | heterogeneous nuclear ribonucleoprotein D0 isoform a |
| Molecular Function GO Annotation | Evidence | References | Source |
|---|---|---|---|
| enables RNA binding |
IDA
IDA: Inferred from direct assay
|
8321232 | GOA |
| enables protein binding |
IPI
IPI: Inferred from physical interaction
|
12107167 | GOA |
| enables telomeric DNA binding |
IDA
IDA: Inferred from direct assay
|
8321232 | GOA |
| Biological Process GO Annotation | Evidence | References | Source |
|---|---|---|---|
| involved in CRD-mediated mRNA stabilization |
IDA
IDA: Inferred from direct assay
|
11051545 | GOA |
| involved in circadian regulation of translation |
IMP
IMP: Inferred from mutant phenotype
|
24423872 | GOA |
| involved in negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay |
IDA
IDA: Inferred from direct assay
|
11051545 | GOA |
| involved in positive regulation of cytoplasmic translation |
IDA
IDA: Inferred from direct assay
|
11051545 | GOA |
| involved in positive regulation of translation |
IMP
IMP: Inferred from mutant phenotype
|
24423872 | GOA |
| involved in regulation of circadian rhythm |
IMP
IMP: Inferred from mutant phenotype
|
24423872 | GOA |
| Cellular Component GO Annotation | Evidence | References | Source |
|---|---|---|---|
| located in cytosol |
IDA
IDA: Inferred from direct assay
|
11051545 | GOA |
| part of mCRD-mediated mRNA stability complex |
IPI
IPI: Inferred from physical interaction
|
11051545 | GOA |
| part of ribonucleoprotein complex |
IDA
IDA: Inferred from direct assay
|
17289661 | GOA |
HNRNPD Protein Structure
CBFNT: CBFNT (NUC161) domain (1 - 79)
RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (100 - 167)
RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (184 - 243)
- 0
- 100
- 200
- 300
- 355 a.a.
| Protein Preferred Names | Protein Names | |
|---|---|---|
|
heterogeneous nuclear ribonucleoprotein D0 |
|
HNRNPD Protein-protein interaction Information
|
Type
|
Protein Name | Protein ID | Interactor | Interactor Species | Interactor ID | Detection Method | References |
|---|---|---|---|---|---|---|---|
|
Intra
|
HNRNPD | Q14103 | LDHAL6B | Homo sapiens | Q9BYZ2 | 12107167 | |
|
Intra
|
HNRNPD | Q14103 | ING4 | Homo sapiens | Q9UNL4 | 23603392 | |
|
Intra
|
HNRNPD | Q14103 | HNRNPA2B1 | Homo sapiens | P22626 | 30021884 | |
|
Intra
|
HNRNPD | Q14103 | HNRNPA2B1 | Homo sapiens | P22626 | 26496610 | |
|
Intra
|
HNRNPD | Q14103 | HNRNPA2B1 | Homo sapiens | P22626 | 35271311 | |
|
Intra
|
HNRNPD | Q14103 | HNRNPDL | Homo sapiens | O14979 | 35271311 | |
|
Intra
|
HNRNPD | Q14103 | HNRNPU | Homo sapiens | Q00839 | 26496610 | |
|
Intra
|
HNRNPD | Q14103 | HNRNPU | Homo sapiens | Q00839 | 35271311 | |
|
Intra
|
HNRNPD | Q14103 | HNRNPC | Homo sapiens | P07910 | 35271311 | |
|
Intra
|
HNRNPD | Q14103 | HNRNPC | Homo sapiens | P07910 | 22365833 |
Related Diseases
| Diseases | Alias | |
|---|---|---|
| Ulcerative Blepharitis |
|
|
| Chromosome 4q21 Deletion Syndrome |
|
|
Orthologs Information
| Species | Symbol | Source | ID |
|---|---|---|---|
| Canis familiaris | HNRNPD | VGNC | VGNC:54954 |
| Bos taurus | HNRNPD | VGNC | VGNC:52786 |
| Mus musculus | HNRNPD | MGD | MGI:101947 |
| Felis catus | HNRNPD | VGNC | VGNC:67606 |
| Rattus norvegicus | HNRNPD | RGD | RGD:620365 |
| Macaca mulatta | HNRNPD | VGNC | VGNC:106590 |
| Others | HNRNPD | NCBI |